4.7 Article

Label-free fluorescence detection of circulating microRNAs based on duplex-specific nuclease-assisted target recycling coupled with rolling circle amplification

Journal

TALANTA
Volume 200, Issue -, Pages 480-486

Publisher

ELSEVIER SCIENCE BV
DOI: 10.1016/j.talanta.2019.01.038

Keywords

Serum circulating microRNAs; Duplex specific nuclease; Rolling circle amplification; Biosensor; SYBR gold dye

Funding

  1. National Natural Science Foundation of China, China [21402105]
  2. Shenzhen municipal government SZSITIC, China [CXB201104210013]

Ask authors/readers for more resources

A simpler, more rapid and selective biosensor has been developed for the sensitive detection of circulating miRNAs (c-miRNAs) based on duplex-specific nuclease (DSN)-assisted target recycling coupled with rolling circle amplification (RCA) using SYBR Gold Dye as a signal indicator. This biosensor exhibits a tremendously low detection limit of 0.3 fM of c-miRNAs and shows high selectivity for one-base mismatched c-miRNA. In addition, most importantly, the biosensor could accurately determine the amounts of target c-miRNA in total c-miRNAs isolated from human serums and human cancer cell lines, which confirms that the biosensor could be used to quantify c-miRNAs in complex biological samples and for the clinical early diagnosis of cancers based on c-miRNAs detection.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.7
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Biotechnology & Applied Microbiology

NFE2L3 as a Potential Functional Gene Regulating Immune Microenvironment in Human Kidney Cancer

Qian Zhang, Donge Tang, Aiyun Zha, Jingquan He, Dandan Li, Yumei Chen, Wanxia Cai, Jian Dai, Shaodong Luan, Lianghong Yin, Wei Zhang, Yong Dai

Summary: The expression of NFE2L3 is higher in renal cancerous tissues compared to normal tissues and is associated with poor prognosis in patients. Furthermore, NFE2L3 plays a role in regulating the immune microenvironment in renal cancer patients.

BIOMED RESEARCH INTERNATIONAL (2022)

Article Immunology

A comprehensive investigation discovered the novel methyltransferase METTL24 as one presumably prognostic gene for kidney renal clear cell carcinoma potentially modulating tumor immune microenvironment

Zhongji Jiang, Wei Zhang, Zhipeng Zeng, Donge Tang, Chujiao Li, Wanxia Cai, Yumei Chen, Ya Li, Qiu Jin, Xinzhou Zhang, Lianghong Yin, Xueyan Liu, Yong Xu, Yong Dai

Summary: This study reveals the important role of METTL24 in kidney renal clear cell carcinoma (KIRC), showing its potential as a prognostic marker and immune-related target for clinical treatment. METTL24 is associated with immune infiltration levels and affects the overall survival rates of KIRC patients.

FRONTIERS IN IMMUNOLOGY (2022)

Article Cell Biology

MicroRNA-455-3p accelerate malignant progression of tumor by targeting H2AFZ in colorectal cancer

Lizhen Ye, Tingting Fan, Ying Qin, Cheng Qiu, Lulu Li, Mengmeng Dai, Yaoyao Zhou, Yan Chen, Yuyang Jiang

Summary: miR-455-3p is up-regulated in colorectal cancer, promoting tumor growth, suppressing cell apoptosis, and stimulating cell migration. Its direct gene target is H2AFZ.

CELL CYCLE (2023)

Article Chemistry, Analytical

Simple Isothermal and Label-Free Strategy for Colorectal Cancer Potential Biomarker miR-625-5p Detection

Yifei Chen, Lizhen Ye, Hui Chen, Tingting Fan, Cheng Qiu, Yan Chen, Yuyang Jiang

Summary: miRNA is a promising biomarker for cancer diagnosis, and the development of new detection methods for it has been a hot topic recently. In this study, we identified miR-625-5p as a potential biomarker for colorectal cancer through expression analysis and phenotypic experiments. We also developed a novel detection method based on strand displacement amplification (SDA) to monitor miR-625-5p levels, which showed good response and high specificity.

BIOSENSORS-BASEL (2023)

Article Chemistry, Analytical

A universal platform for one-pot detection of circulating non-coding RNA combining CRISPR-Cas12a and branched rolling circle amplification

Hui Chen, Zhiyuan Zhuang, Yan Chen, Cheng Qiu, Ying Qin, Chunyan Tan, Ying Tan, Yuyang Jiang

Summary: A new platform based on branched rolling circle amplification and CRISPR-Cas12a was developed for the detection of multiple circulating non-coding RNAs as biomarkers for early-stage colorectal cancer diagnosis. The method showed high detection sensitivity and consistent results with the conventional RT-qPCR method. This one-pot, isothermal, and specific BRCACas platform holds promise as a rapid, adaptable, and practical diagnostic/prognostic cancer screening method.

ANALYTICA CHIMICA ACTA (2023)

Review Biochemistry & Molecular Biology

Antitumor Activity of s-Triazine Derivatives: A Systematic Review

Qiuzi Dai, Qinsheng Sun, Xiaorong Ouyang, Jinyang Liu, Liye Jin, Ahao Liu, Binsheng He, Tingting Fan, Yuyang Jiang

Summary: 1,3,5-triazine derivatives, also known as s-triazines, have shown their potential as anticancer agents. Several s-triazine derivatives have been approved for the treatment of refractory ovarian cancer, metastatic breast cancer, and leukemia. This review focuses on the medicinal chemistry of s-triazines and their targeting of topoisomerases, tyrosine kinases, phosphoinositide 3-kinases, NADP+-dependent isocitrate dehydrogenases, and cyclin-dependent kinases in various signaling pathways. It provides a comprehensive summary of the discovery, structure optimization, and biological applications of these s-triazine derivatives as anticancer drugs.

MOLECULES (2023)

Article Immunology

Screening biomarkers for Sjogren's Syndrome by computer analysis and evaluating the expression correlations with the levels of immune cells

Yafang Zhong, Wei Zhang, Dongzhou Liu, Zhipeng Zeng, Shengyou Liao, Wanxia Cai, Jiayi Liu, Lian Li, Xiaoping Hong, Donge Tang, Yong Dai

Summary: In this study, seven key biomarkers were identified and validated for the potential diagnosis of Chinese SS patients using gene expression data analysis.

FRONTIERS IN IMMUNOLOGY (2023)

Article Chemistry, Analytical

Whole-Bacterium SELEX Aptamer Selection of Fusobacterium nucleatum and Application to Colorectal Cancer Noninvasive Screening in Human Feces

Ning Wang, Tingting Fan, Yan Chen, Hui Chen, Ying Qin, Yuyang Jiang

Summary: Colorectal cancer (CRC) is now the third most common malignancy worldwide. Current screening methods for CRC have disadvantages such as high costs, difficult procedures, and long implementation timelines. Fecal screening for CRC offers advantages of ease of operation, noninvasiveness, cost-effectiveness, and superior sensitivity. In this study, aptamers were developed using the whole-bacterium SELEX method to specifically target Fusobacterium nucleatum (F. nucleatum), which is a crucial biomarker for early detection and prognosis of CRC. The aptamers showed high specificity and affinity, and hold promise for CRC diagnosis and prognostic prediction.

ANALYTICAL CHEMISTRY (2023)

Article Biochemistry & Molecular Biology

CRISPR/Cas9-Mediated Gene Correction in Osteopetrosis Patient-Derived iPSCs

Dandan Li, Minglin Ou, Wei Zhang, Qi Luo, Wanxia Cai, Chune Mo, Wenken Liang, Guandong Dai, Lianghong Yin, Peng Zhu, Donge Tang, Yong Dai

Summary: In this study, the point mutation R286W of the CLCN7 gene in ADO2-iPSCs was successfully corrected by CRISPR/Cas9 mediated homologous recombination. The obtained gene corrected ADO2-iPSCs (GC-ADO2-iPSCs) serve as an ideal control cellular model for investigating the pathogenesis of osteopetrosis.

FRONTIERS IN BIOSCIENCE-LANDMARK (2023)

Article Chemistry, Medicinal

Infrared Spectral Analysis for Prediction of Functional Groups Based on Feature-Aggregated Deep Learning

Tianyi Wang, Ying Tan, Yu Zong Chen, Chunyan Tan

Summary: Infrared (IR) spectroscopy is a powerful tool for analyzing functional groups in organic compounds. This paper presents a new deep learning method for transforming IR spectral features into intuitive image-like feature maps and predicting major functional groups. The method successfully identifies 21 major functional groups for each molecule without expert guidance and feature selection, and it also shows potential for automated analysis in various fields.

JOURNAL OF CHEMICAL INFORMATION AND MODELING (2023)

Article Multidisciplinary Sciences

The novel putative methyltransferase METTL7A as one prognostic biomarker potentially associated with immune infiltration in human renal cancer

Zhiqian Yang, Wei Zhang, Lintai Li, Nan Hu, Xiangnan Dong, Yumei Chen, Wanxia Cai, Lianghong Yin, Fanna Liu, Donge Tang, Yong Dai

Summary: In this study, we found that METTL7A gene was downregulated in renal cancer tissues and low expression was correlated with poor prognosis. Functional enrichment analysis suggested the potential role of METTL7A in immune functions in renal cancer. Our findings indicate that METTL7A can serve as a prognostic biomarker and immunotherapy target for kidney cancer.

HELIYON (2023)

Article Medicine, Research & Experimental

The characteristics of extrachromosomal circular DNA in patients with end-stage renal disease

Yue Peng, Yixi Li, Wei Zhang, Yu ShangGuan, Ting Xie, Kang Wang, Jing Qiu, Wenjun Pu, Biying Hu, Xinzhou Zhang, Lianghong Yin, Donge Tang, Yong Dai

Summary: This study identified and characterized extrachromosomal circular DNA (eccDNA) in end-stage renal disease (ESRD) patients. The distribution and motifs of eccDNA in ESRD patients were analyzed and compared to healthy individuals. Additionally, specific eccDNA-targeting genes associated with ESRD were identified, suggesting a potential mechanism for ESRD development.

EUROPEAN JOURNAL OF MEDICAL RESEARCH (2023)

Article Nanoscience & Nanotechnology

A visualized automatic particle counting strategy for single-cell level telomerase activity quantification

Chen Li, Hui Chen, Tingting Fan, Jingru Zhao, Zheng Ding, Zeyu Lin, Shuqing Sun, Chunyan Tan, Feng Liu, Hongtao Jiang, Ying Tan

Summary: In this study, a dark-field microscopy visual single-particle detection scheme was developed to accurately evaluate telomerase activity. The method involved the attachment of telomerase substrate primer to magnetic beads, which were then hybridized with complementary DNA modified with gold nanoparticles. The telomerase activity was quantitatively measured by visually counting bright spots based on dark-field microscopy. This strategy showed excellent sensitivity and specificity and has the potential to be a powerful tool in early and noninvasive diagnosis of bladder cancer.
Article Nanoscience & Nanotechnology

Molecular Design and Photothermal Application of Thienoisoindigo Dyes with Aggregation-Induced Emission

Weijie Chen, Huijuan Chen, Yurou Huang, Ying Tan, Chunyan Tan, Yuan Xie, Jun Yin

Summary: Organic fluorescent dyes with aggregation-induced emission (AIE) property have extensive applications in imaging, labeling, and adjusting microprocesses in aggregated environments. Thienoisoindigo derivatives with AIE characteristics, such as TII-TPE, have been developed and demonstrated high photostability and efficient photothermal conversion efficiency. These derivatives can be used as functional AIE structures by installing AIE blocks or other rotatable groups. The nanoparticles prepared from thienoisoindigo and tetraphenylethene (TII-TPE) and thienoisoindigo and triphenylamine (TII-TPA) showed significant inhibitory effects on tumor growth in a tumor mouse model after four treatment cycles.

ACS APPLIED BIO MATERIALS (2022)

Article Nanoscience & Nanotechnology

Molecular Design and Photothermal Application of Thienoisoindigo Dyes with Aggregation-Induced Emission

Weijie Chen, Huijuan Chen, Yurou Huang, Ying Tan, Chunyan Tan, Yuan Xie, Jun Yin

Summary: Organic fluorescent dyes with aggregation-induced emission (AIE) property have a wide range of applications in imaging, labeling, and microprocesses in aggregated environments. In this study, a thienoisoindigo derivative with AIE characteristics was developed and nanoparticles were prepared, showing significant inhibition of tumor growth.

ACS APPLIED BIO MATERIALS (2022)

Article Chemistry, Analytical

Enhancing electrochemiluminescence by modifying Fe3CuO4 and CdS@ZnS: A novel ECL sensor for highly sensitive detection of permethrin

Qian Wu, Li Tian, Xiangyu Shan, Huiling Li, Chao Li, Juan Lu

Summary: A novel ECL sensor was developed by modifying Fe3CuO4-Ru(bpy)3+ and GO-CdS@ZnS on the electrode for the detection of permethrin. The sensor exhibited high sensitivity and a wide detection range.

TALANTA (2024)

Article Chemistry, Analytical

Ag+-stabilized DNA triplex coupled with catalytic hairpin assembly and CRISPR/Cas12a amplifications for sensitive metallothionein assay

Tingting Gong, Lei Liao, Bingying Jiang, Ruo Yuan, Yun Xiang

Summary: In this study, a fluorescent biosensing system for high sensitivity detection of MT was established using a new Ag+-stabilized DNA triplex probe (Ag+-SDTP) combined with catalytic hairpin assembly (CHA) and CRISPR/Cas12a signal enhancements. The sensing method is able to selectively detect MT from other non-specific molecules and can achieve low level detection of MT in diluted human serums, demonstrating its potential for monitoring disease-specific MT biomarker at trace levels.

TALANTA (2024)

Article Chemistry, Analytical

Boron quantification using ion chromatography tandem triple quadrupole mass spectrometry. Application to retention analysis in boron-treated wood

Estrella Sanz Rodriguez, Kyra Wood, Paul R. Haddad, Brett Paull

Summary: This study presents a simple, rapid, and reliable method for determining boron in aqueous solutions using suppressed ion chromatography coupled to electrospray ionisation-triple quadrupole mass spectrometry. The method achieved a low limit of detection and demonstrated excellent analytical performance.

TALANTA (2024)

Article Chemistry, Analytical

Innovative SALDI mass spectrometry analysis for Alzheimer's disease synthetic peptides detection

Aline Cournut, Paul Moustiez, Yannick Coffinier, Christine Enjalbal, Claudia Bich

Summary: Alzheimer's disease is a major cause of senile dementia and is characterized by the aggregation of neurofibrillary tangles and amyloid plaques in the brain. The A beta 1-42 peptide is considered the primary cause of neurotoxicity due to its insolubility and subsequent aggregation. A beta 1-42 and A beta 1-40 have been identified as relevant biomarkers for AD diagnosis, and SurfaceAssisted Laser Desorption/Ionization Mass Spectrometry (SALDI-MS) was used to monitor the A beta 1-42/A beta 1-40 ratio without prior sample treatment.

TALANTA (2024)

Article Chemistry, Analytical

Deep eutectic solvents for the determination of endocrine disrupting chemicals

Dotse Selali Chormey, Buse Tugba Zaman, Tulay Borahan Kustanto, Sezin Erarpat Bodur, Suleyman Bodur, Elif Ozturk Er, Sezgin Bakirdere

Summary: This review provides an overview of the harmful effects of endocrine disrupting chemicals (EDCs) on human health and introduces the methods for analyzing EDCs. Recent research has focused on using green chemicals, such as deep eutectic solvents (DESs), for microextraction to ensure environmental safety.

TALANTA (2024)

Article Chemistry, Analytical

Nanopore-related cellular death through cytoskeleton depolymerization by drug-induced ROS

Yan Zhang, Renfeng Xu, Jingjing Wu, Zhenghong Zhang, Yuhuang Wang, Hongqin Yang, Sheng Zhang

Summary: This study visualized the pore-like structures in prostate cancer cell membranes after treatment with the anticancer drug paclitaxel, demonstrating its mechanism of action related to oxidative damage.

TALANTA (2024)

Article Chemistry, Analytical

CRISPR-empowered electrochemical biosensor for target amplification-free and sensitive detection of miRNA

Chihong Ma, Qin Zhou, Jinjin Shi, Hua Gao, Di Huang, Huimin Xue, Han Wang, Zhenzhong Zhang, Sen Yang, Junli Zhang, Kaixiang Zhang

Summary: We developed a CRISPR-empowered electrochemical biosensor, named PER-E-CRISPR, for amplification-free and sensitive detection of miR-21. The biosensor combines the advantages of CRISPR/Cas13a and primer exchange reaction (PER) for target amplification. Under optimized conditions, the PER-E-CRISPR assay exhibits a linear range from 10-13 to 10-7 M and a limit of detection of 30.2 fM. The biosensor shows excellent performance in actual plasma, indicating promising prospects for miRNA detection in molecular diagnosis.

TALANTA (2024)

Article Chemistry, Analytical

Application and evaluation of molecular docking for aptamer and small molecular interaction- A case study with tetracycline antibiotics

Gang Liang, Jie Zhao, Yufei Gao, Tao Xie, Jianhui Zhen, Ligang Pan, Wenwen Gong

Summary: Molecular docking (MD) analysis is widely used for studying the interaction between aptamers and small molecules. This study established steady-state aptamers of tertiary structures (SATS) using specific aptamers of tetracycline antibiotics as docking models. Molecular docking results revealed multiple binding sites in the SATS of aptamers, with significant variations in binding free energy (BFE) and docking score (DS). The study also proposed a method for MD analysis based on SATS, providing insights into binding mode and predicting binding sites.

TALANTA (2024)

Article Chemistry, Analytical

Highly bright stable organic radicals encapsulated by amphiphilic polypeptide for efficient near-infrared phototheranostics

Yixuan Xu, Changchang Teng, Huiping Dang, Dalong Yin, Lifeng Yan

Summary: Stable organic radical molecules with high NIR fluorescence quantum efficiency have been synthesized and encapsulated into nanoparticles, which show great potential for both photodynamic therapy (PDT) and photothermal therapy (PTT) of tumors.

TALANTA (2024)

Article Chemistry, Analytical

The construction of highly selective surface molecularly imprinted polymers based on Cu(II) coordination for the detection of bisphenol A

Yu Su, Dandan Yang, Yanjie Wang, Jie Ding, Lan Ding, Daqian Song

Summary: In this study, a highly selective molecularly imprinted polymer Cu-MIPs@CS was designed and synthesized for bisphenol A (BPA). Cu-MIPs@CS showed significantly enhanced imprinting factor and selective factor towards BPA compared to MIPs@CS. It also exhibited superior discrimination ability between BPA and its structural analogue. Additionally, Cu-MIPs@CS were successfully applied as a solid phase extraction adsorbent for the determination of BPA in drinking water samples.

TALANTA (2024)

Article Chemistry, Analytical

A simple joint detection platform for high-throughput single-cell heterogeneity screening

Yi Qiao, Qiongdan Zhang, Yukun He, Tianguang Cheng, Jing Tu

Summary: Single cell heterogeneity plays an important role in many biological phenomena, and distinguishing cells with specific mutations is beneficial for clinical diagnosis and drug screening. This study introduces a gel plate platform that can distinguish cell types based on their phenotypes, with low equipment requirement. The gel platform has potential in point-of-care circumstances and single-cell stimulation responses that prioritize efficiency and simplicity.

TALANTA (2024)

Article Chemistry, Analytical

Nanotechnology-based analytical techniques for the detection of contaminants in aquatic products

Chengke Wang, Shuyang Sun, Ping Wang, Huawei Zhao, Wenling Li

Summary: The food safety of aquatic products is a global concern. Nanotechnology-based analyses have advantages in the detection of bacteria, metal ions, and small molecule contaminants. This review summarizes the recent advances in biosensing strategies for aquatic products and highlights the application of nanomaterials, lateral flow-based biosensors, surface-enhanced Raman scattering, microfluidic chips, and molecular imprinting technologies.

TALANTA (2024)

Article Chemistry, Analytical

A sensitive off-on electrochemiluminescence DNA sensor based on signal cascade amplification circuit and distance-dependent energy transfer

Liping Zhu, Zeng Tang, Xuemei Zhang, Li Zhu, Tian Meng, Linying Yu, Ting Xiao, Shasha Lu, Xiaoli Xiong, Xiurong Yang

Summary: A sensitive off-on electrochemiluminescence DNA sensor was developed using Exo III-assisted cascade amplification system. The sensor achieved high selectivity and ultra-high sensitivity in detecting target DNA by utilizing ECL and SPR effects. This study provides a new perspective for designing highly sensitive and programmable ECL biosensors.

TALANTA (2024)

Article Chemistry, Analytical

A binary system based DNA tetrahedron and fluorogenic RNA aptamers for highly specific and label-free mRNA imaging in living cells

Tong Li, Mengxu Sun, Suping Xia, Ting Huang, Rong-Tian Li, Chunrong Li, Zong Dai, Jin-Xiang Chen, Jun Chen, Nuan Jia

Summary: Here, we developed a binary system based on DNA tetrahedron and fluorogenic RNA aptamers for highly specific and label-free mRNA imaging in living cells. This system achieved high specificity label-free detection of nucleic acids with a detection limit of 1.34 nM. The method has potential applications in early disease diagnosis and new drug development.

TALANTA (2024)

Article Chemistry, Analytical

Design and synthesis of hierarchical MnO-Fe3O4@C/expanded graphite composite for sensitive electrochemical detection of bisphenol A

Yao Zhao, Shu Zhang, Wang Yao, Yuxuan Zhu, Jing Qian, Juan Yang, Nianjun Yang

Summary: A new hierarchical nanostructured composite with high conductivity and catalytic activity is synthesized. The sensor exhibits significant catalytic effect and high sensitivity for monitoring the environmental endocrine disruptor bisphenol A (BPA).

TALANTA (2024)