Metabolomics and 16S rRNA sequencing of human colorectal cancers and adjacent mucosa

Database resources of the National Center for Biotechnology Information

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Global metabolic reprogramming of colorectal cancer occurs at adenoma stage and is induced by MYC

(2017) Kiyotoshi Satoh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-resolution bacterial 16S rRNA gene profile meta-analysis and biofilm status reveal common colorectal cancer consortia

(2017) Julia L. Drewes et al.   npj Biofilms and Microbiomes

Gut Microbiota, Inflammation, and Colorectal Cancer

(2016) Caitlin A. Brennan et al.   Annual Review of Microbiology

MeFiT: merging and filtering tool for illumina paired-end reads for 16S rRNA amplicon sequencing

(2016) Hardik I. Parikh et al.   BMC BIOINFORMATICS

Better survival in right-sided versus left-sided stage I - III colon cancer patients

(2016) Rene Warschkow et al.   BMC CANCER

Bile acid: a potential inducer of colon cancer stem cells

(2016) Lulu Farhana et al.   Stem Cell Research & Therapy

Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes

(2016) Shoko Iwai et al.   PLoS One

Tissue Metabonomic Phenotyping for Diagnosis and Prognosis of Human Colorectal Cancer

(2016) Yuan Tian et al.   Scientific Reports

PhyloToAST: Bioinformatics tools for species-level analysis and visualization of complex microbial datasets

(2016) Shareef M. Dabdoub et al.   Scientific Reports

Metabolism Links Bacterial Biofilms and Colon Carcinogenesis

(2015) Caroline H. Johnson et al.   Cell Metabolism

PASTA: Ultra-Large Multiple Sequence Alignment for Nucleotide and Amino-Acid Sequences

(2015) Siavash Mirarab et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Different treatment strategies and molecular features between right-sided and left-sided colon cancers

(2015) Hong Shen   WORLD JOURNAL OF GASTROENTEROLOGY

MICCA: a complete and accurate software for taxonomic profiling of metagenomic data

(2015) Davide Albanese et al.   Scientific Reports

Metabolomics in nutritional epidemiology: identifying metabolites associated with diet and quantifying their potential to uncover diet-disease relations in populations

(2014) Kristin A Guertin et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

Microbiota organization is a distinct feature of proximal colorectal cancers

(2014) Christine M. Dejea et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

A Novel Serum Metabolomics-Based Diagnostic Approach for Colorectal Cancer

(2012) Shin Nishiumi et al.   PLoS One

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

Serotonin and GI Disorders: An Update on Clinical and Experimental Studies

(2012) Marcus Manocha et al.   Clinical and Translational Gastroenterology

Mass Spectrometry Strategies in Metabolomics

(2011) Zhentian Lei et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Triterpenoids as potential agents for the chemoprevention and therapy of breast cancer

(2010) Anupam Bishayee   Frontiers in Bioscience-Landmark

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Cross-Platform Comparison of Methods for Quantitative Metabolomics of Primary Metabolism

(2009) Jörg Martin Büscher et al.   ANALYTICAL CHEMISTRY

Carotenoid Intake and Colorectal Cancer Risk: The Multiethnic Cohort Study

(2009) Song-Yi Park et al.   JOURNAL OF EPIDEMIOLOGY

Serotonin Regulates Macrophage-Mediated Angiogenesis in a Mouse Model of Colon Cancer Allografts

(2008) A. Nocito et al.   CANCER RESEARCH