Global transcriptome and weighted gene co-expression network analyses reveal hybrid-specific modules and candidate genes related to plant height development in maize

KNOTTED1 Cofactors, BLH12 and BLH14, Regulate Internode Patterning and Vein Anastomosis in Maize

(2017) Katsutoshi Tsuda et al.   PLANT CELL

Gibberellin in plant height control: old player, new story

(2017) Yijun Wang et al.   PLANT CELL REPORTS

The genetic and molecular basis of crop height based on a rice model

(2017) Fang Liu et al.   PLANTA

Gibberellins Promote Brassinosteroids Action and Both Increase Heterosis for Plant Height in Maize (Zea mays L.)

(2017) Songlin Hu et al.   Frontiers in Plant Science

Transcriptome analysis of the oriental melon (Cucumis meloL. var.makuwa) during fruit development

(2017) Ah-Young Shin et al.   PeerJ

Genome-wide identification and expression analysis of the ClTCP transcription factors in Citrullus lanatus

(2016) Pibiao Shi et al.   BMC PLANT BIOLOGY

Brevis plant1, a putative inositol polyphosphate 5-phosphatase, is required for internode elongation in maize

(2016) Luis M. Avila et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcriptome analysis reveals a comprehensive insect resistance response mechanism in cotton to infestation by the phloem feeding insectBemisia tabaci(whitefly)

(2016) Jianying Li et al.   PLANT BIOTECHNOLOGY JOURNAL

Genetic architecture of plant height in maize phenotype-selected introgression families

(2016) Adel H. Abdel-Ghani et al.   PLANT BREEDING

Co-expression network analyses identify functional modules associated with development and stress response in Gossypium arboreum

(2016) Qi You et al.   Scientific Reports

Strigolactones, a Novel Carotenoid-Derived Plant Hormone

(2015) Salim Al-Babili et al.   Annual Review of Plant Biology

MicroRNA and mRNA expression profiling analysis revealed the regulation of plant height in Gossypium hirsutum

(2015) Wenyan An et al.   BMC GENOMICS

Dissection of the genetic architecture underlying the plant density response by mapping plant height-related traits in maize (Zea mays L.)

(2015) Lixia Ku et al.   MOLECULAR GENETICS AND GENOMICS

Growth-Regulating Factors (GRFs): A Small Transcription Factor Family with Important Functions in Plant Biology

(2015) Mohammad Amin Omidbakhshfard et al.   Molecular Plant

GROWTH REGULATING FACTOR5 Stimulates Arabidopsis Chloroplast Division, Photosynthesis, and Leaf Longevity

(2015) Liesbeth Vercruyssen et al.   PLANT PHYSIOLOGY

The Genetic Architecture Of Maize Height

(2014) Jason A. Peiffer et al.   GENETICS

The Boron Efflux Transporter ROTTEN EAR Is Required for Maize Inflorescence Development and Fertility

(2014) Mithu Chatterjee et al.   PLANT CELL

Dlf1, a WRKY Transcription Factor, Is Involved in the Control of Flowering Time and Plant Height in Rice

(2014) Yuhui Cai et al.   PLoS One

The maize Gα gene COMPACT PLANT2 functions in CLAVATA signalling to control shoot meristem size

(2013) Peter Bommert et al.   NATURE

RNA sequencing reveals the complex regulatory network in the maize kernel

(2013) Junjie Fu et al.   Nature Communications

Molecular mechanism of strigolactone perception by DWARF14

(2013) Hidemitsu Nakamura et al.   Nature Communications

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

ZmGA3ox2, a candidate gene for a major QTL,qPH3.1, for plant height in maize

(2012) Feng Teng et al.   PLANT JOURNAL

Hormone Signalling Crosstalk in Plant Growth Regulation

(2011) Stephen Depuydt et al.   CURRENT BIOLOGY

Identification of genes involved in cell wall biogenesis in grasses by differential gene expression profiling of elongating and non-elongating maize internodes

(2011) Maurice Bosch et al.   JOURNAL OF EXPERIMENTAL BOTANY

Identification of a functional transposon insertion in the maize domestication gene tb1

(2011) Anthony Studer et al.   NATURE GENETICS

Brassinosteroid control of sex determination in maize

(2011) T. Hartwig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

(2010) Murray P Cox et al.   BMC BIOINFORMATICS

Brachytic2/ZmABCB1 functions in IAA export from intercalary meristems

(2010) Anne Sophie Knöller et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Maize DELLA Proteins dwarf plant8 and dwarf plant9 as Modulators of Plant Development

(2010) Shai J. Lawit et al.   PLANT AND CELL PHYSIOLOGY

Food Security: The Challenge of Feeding 9 Billion People

(2010) H. C. J. Godfray et al.   SCIENCE

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

EngineeringOsBAK1gene as a molecular tool to improve rice architecture for high yield

(2009) Dan Li et al.   PLANT BIOTECHNOLOGY JOURNAL

DWARF AND LOW-TILLERING, a new member of the GRAS family, plays positive roles in brassinosteroid signaling in rice

(2009) Hongning Tong et al.   PLANT JOURNAL

Genome-wide transcriptome analysis of two maize inbred lines under drought stress

(2009) Jun Zheng et al.   PLANT MOLECULAR BIOLOGY

Molecular Basis of Plant Architecture

(2008) Yonghong Wang et al.   Annual Review of Plant Biology

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Release of the Repressive Activity of Rice DELLA Protein SLR1 by Gibberellin Does Not Require SLR1 Degradation in the gid2 Mutant

(2008) M. Ueguchi-Tanaka et al.   PLANT CELL

Plants to power: bioenergy to fuel the future

(2008) Joshua S. Yuan et al.   TRENDS IN PLANT SCIENCE