LncRNA33732-respiratory burst oxidase module associated with WRKY1 in tomato- Phytophthora infestans interactions

Genome-wide profiling of long non-coding RNAs from tomato and a comparison with mRNAs associated with the regulation of fruit ripening

(2018) Minghui Wang et al.   BMC PLANT BIOLOGY

Re-analysis of long non-coding RNAs and prediction of circRNAs reveal their novel roles in susceptible tomato following TYLCV infection

(2018) Jinyan Wang et al.   BMC PLANT BIOLOGY

Genome-wide identification, characterization and expression analysis of long non-coding RNAs in different tissues of apple

(2018) Na An et al.   GENE

A transcription factor network responsive to high CO2/hypoxia is involved in deastringency in persimmon fruit

(2018) Qing-gang Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Tomato Nucleotide Binding Sites−Leucine-Rich Repeat Gene Is Positively Involved in Plant Resistance to Phytophthora infestans

(2018) Ning Jiang et al.   PHYTOPATHOLOGY

CRISPR/Cas9-mediated mutagenesis of lncRNA1459 alters tomato fruit ripening

(2018) Ran Li et al.   PLANT JOURNAL

H 2 O 2 and NADPH oxidases involve in regulation of 2-(2-phenylethyl)chromones accumulation during salt stress in Aquilaria sinensis calli

(2018) Xiaohui Wang et al.   PLANT SCIENCE

Rice WRKY11 Plays a Role in Pathogen Defense and Drought Tolerance

(2018) Heyoung Lee et al.   Rice

Genome-Wide Identification and Characterization of Long Non-Coding RNA in Wheat Roots in Response to Ca2+ Channel Blocker

(2018) Keshi Ma et al.   Frontiers in Plant Science

A Genomic View of Alternative Splicing of Long Non-coding RNAs during Rice Seed Development Reveals Extensive Splicing and lncRNA Gene Families

(2018) Edward A. Kiegle et al.   Frontiers in Plant Science

Regulation of Long Noncoding RNAs Responsive to Phytoplasma Infection in Paulownia tomentosa

(2018) Guoqiang Fan et al.   International Journal of Genomics

Long Non-Coding RNAs Responsive to Salt and Boron Stress in the Hyper-Arid Lluteño Maize from Atacama Desert

(2018) Wilson Huanca-Mamani et al.   Genes

Function identification of miR482b, a negative regulator during tomato resistance to Phytophthora infestans

(2018) Ning Jiang et al.   Horticulture Research

Silencing of RBOHF2 Causes Leaf Age–Dependent Accelerated Senescence, Salicylic Acid Accumulation, and Powdery Mildew Resistance in Barley

(2017) Denise Pereira Torres et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Hydrogen peroxide produced by NADPH oxidase: a novel downstream signaling pathway in melatonin-induced stress tolerance in Solanum lycopersicum

(2017) Biao Gong et al.   PHYSIOLOGIA PLANTARUM

Long noncoding RNAs involve in resistance to Verticillium dahliae , a fungal disease in cotton

(2017) Lin Zhang et al.   PLANT BIOTECHNOLOGY JOURNAL

ELF18-INDUCED LONG-NONCODING RNA Associates with Mediator to Enhance Expression of Innate Immune Response Genes in Arabidopsis

(2017) Jun Sung Seo et al.   PLANT CELL

Brassinosteroids act as a positive regulator for resistance against root-knot nematode involving RESPIRATORY BURST OXIDASE HOMOLOG-dependent activation of MAPKs in tomato

(2017) Liu-Xia Song et al.   PLANT CELL AND ENVIRONMENT

Comparative transcriptome analysis between resistant and susceptible tomato allows the identification of lncRNA16397 conferring resistance toPhytophthora infestansby co-expressing glutaredoxin

(2017) Jun Cui et al.   PLANT JOURNAL

Light Signaling-Dependent Regulation of Photoinhibition and Photoprotection in Tomato

(2017) Feng Wang et al.   PLANT PHYSIOLOGY

A Nucleus-Localized Long Non-Coding RNA Enhances Drought and Salt Stress Tolerance

(2017) Tao Qin et al.   PLANT PHYSIOLOGY

Effective enhancement of resistance to Phytophthora infestans by overexpression of miR172a and b in Solanum lycopersicum

(2017) Yushi Luan et al.   PLANTA

Transcriptome signatures of tomato leaf induced by Phytophthora infestans and functional identification of transcription factor SpWRKY3

(2017) Jun Cui et al.   THEORETICAL AND APPLIED GENETICS

Long noncoding RNAs that respond to Fusarium oxysporum infection in ‘Cavendish’ banana (Musa acuminata)

(2017) Wenbin Li et al.   Scientific Reports

Long Non-Coding RNAs Responsive to Witches’ Broom Disease in Paulownia tomentosa

(2017) Zhe Wang et al.   Forests

A long noncoding RNA involved in rice reproductive development by negatively regulating osa-miR160

(2017) Meng Wang et al.   Science Bulletin

The Arabidopsis NADPH oxidasesRbohDandRbohFdisplay differential expression patterns and contributions during plant immunity

(2016) Jorge Morales et al.   JOURNAL OF EXPERIMENTAL BOTANY

Unlinking an lncRNA from Its Associated cis Element

(2016) Vikram R. Paralkar et al.   MOLECULAR CELL

Genome-wide identification and characterization of novel lncRNAs in Populus under nitrogen deficiency

(2016) Min Chen et al.   MOLECULAR GENETICS AND GENOMICS

ETHYLENE RESPONSE FACTOR 74 (ERF74 ) plays an essential role in controlling a respiratory burst oxidase homolog D (RbohD)-dependent mechanism in response to different stresses in Arabidopsis

(2016) Yuan Yao et al.   NEW PHYTOLOGIST

Diacylglycerol kinases activate tobacco NADPH oxidase-dependent oxidative burst in response to cryptogein

(2016) Jean-Luc Cacas et al.   PLANT CELL AND ENVIRONMENT

Reactive oxygen species, essential molecules, during plant–pathogen interactions

(2016) Daymi Camejo et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Genome Wide Identification and Functional Prediction of Long Non-Coding RNAs Responsive to Sclerotinia sclerotiorum Infection in Brassica napus

(2016) Raj Kumar Joshi et al.   PLoS One

Identification and characterization of long non-coding RNAs involved in osmotic and salt stress in Medicago truncatula using genome-wide high-throughput sequencing

(2015) Tian-Zuo Wang et al.   BMC PLANT BIOLOGY

Exploring the Secrets of Long Noncoding RNAs

(2015) Mingyang Quan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

RNA sequencing and functional analysis implicate the regulatory role of long non-coding RNAs in tomato fruit ripening

(2015) Benzhong Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Expression and diversification analysis reveals transposable elements play important roles in the origin of Lycopersicon-specific lncRNAs in tomato

(2015) Xin Wang et al.   NEW PHYTOLOGIST

Overexpression ofSpWRKY1promotes resistance toPhytophthora nicotianaeand tolerance to salt and drought stress in transgenic tobacco

(2015) Jing-bin Li et al.   PHYSIOLOGIA PLANTARUM

Regulation of the NADPH Oxidase RBOHD During Plant Immunity

(2015) Yasuhiro Kadota et al.   PLANT AND CELL PHYSIOLOGY

WRKY Transcription Factors Phosphorylated by MAPK Regulate a Plant Immune NADPH Oxidase inNicotiana benthamiana

(2015) Hiroaki Adachi et al.   PLANT CELL

SpWRKY1 mediates resistance to Phytophthora infestans and tolerance to salt and drought stress by modulating reactive oxygen species homeostasis and expression of defense-related genes in tomato

(2015) Jing-bin Li et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Genome-Wide Identification, Characterization and Evolutionary Analysis of Long Intergenic Noncoding RNAs in Cucumber

(2015) Zhiqiang Hao et al.   PLoS One

Genome-wide analysis of tomato long non-coding RNAs and identification as endogenous target mimic for microRNA in response to TYLCV infection

(2015) Jinyan Wang et al.   Scientific Reports

Direct Regulation of the NADPH Oxidase RBOHD by the PRR-Associated Kinase BIK1 during Plant Immunity

(2014) Yasuhiro Kadota et al.   MOLECULAR CELL

MicroRNA profiling analysis throughout tomato fruit development and ripening reveals potential regulatory role of RIN on microRNAs accumulation

(2014) Chao Gao et al.   PLANT BIOTECHNOLOGY JOURNAL

Characterization of stress-responsive lncRNAs inArabidopsis thalianaby integrating expression, epigenetic and structural features

(2014) Chao Di et al.   PLANT JOURNAL

Arabidopsis noncoding RNA mediates control of photomorphogenesis by red light

(2014) Y. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Antisense-mediated FLC transcriptional repression requires the P-TEFb transcription elongation factor

(2014) Z.-W. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Ph-3 gene from Solanum pimpinellifolium encodes CC-NBS-LRR protein conferring resistance to Phytophthora infestans

(2014) Chunzhi Zhang et al.   THEORETICAL AND APPLIED GENETICS

Long non-coding genes implicated in response to stripe rust pathogen stress in wheat (Triticum aestivum L.)

(2013) Hong Zhang et al.   MOLECULAR BIOLOGY REPORTS

Long noncoding RNAs responsive toFusarium oxysporuminfection inArabidopsis thaliana

(2013) Qian-Hao Zhu et al.   NEW PHYTOLOGIST

Fine mapping of the Ph-3 gene conferring resistance to late blight (Phytophthora infestans) in tomato

(2013) Chunzhi Zhang et al.   THEORETICAL AND APPLIED GENETICS

The tomato genome sequence provides insights into fleshy fruit evolution

(2012)   NATURE

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Genome-Wide Analysis Uncovers Regulation of Long Intergenic Noncoding RNAs in Arabidopsis

(2012) J. Liu et al.   PLANT CELL

Identification and characterization of wheat long non-protein coding RNAs responsive to powdery mildew infection and heat stress by using microarray analysis and SBS sequencing

(2011) Mingming Xin et al.   BMC PLANT BIOLOGY

Large-scale prediction of long non-coding RNA functions in a coding–non-coding gene co-expression network

(2011) Qi Liao et al.   NUCLEIC ACIDS RESEARCH

Potato and Tomato Late Blight Caused byPhytophthora infestans: An Overview of Pathology and Resistance Breeding

(2011) Marcin Nowicki et al.   PLANT DISEASE

AtRbohF is a crucial modulator of defence-associated metabolism and a key actor in the interplay between intracellular oxidative stress and pathogenesis responses in Arabidopsis

(2011) Sejir Chaouch et al.   PLANT JOURNAL

Interplay between calcium signalling and early signalling elements during defence responses to microbe- or damage-associated molecular patterns

(2011) Stefanie Ranf et al.   PLANT JOURNAL

Orchestration of the Floral Transition and Floral Development in Arabidopsis by the Bifunctional Transcription Factor APETALA2

(2010) L. Yant et al.   PLANT CELL

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target

(2009) Szymon Swiezewski et al.   NATURE