Transcriptional effects of cadmium on iron homeostasis differ in calamine accessions of Noccaea caerulescens

BRUTUS and its paralogs, BTS LIKE1 and BTS LIKE2, encode important negative regulators of the iron deficiency response in Arabidopsis thaliana

(2017) Maria N. Hindt et al.   Metallomics

Physiological Functions of Cyclic Electron Transport Around Photosystem I in Sustaining Photosynthesis and Plant Growth

(2016) Wataru Yamori et al.   Annual Review of Plant Biology

Cadmium absorption and transportation pathways in plants

(2016) Yu Song et al.   INTERNATIONAL JOURNAL OF PHYTOREMEDIATION

Vacuolar compartmentalization as indispensable component of heavy metal detoxification in plants

(2016) Shanti S. Sharma et al.   PLANT CELL AND ENVIRONMENT

Metal binding to the N-terminal cytoplasmic domain of the PIB ATPase HMA4 is required for metal transport in Arabidopsis

(2016) Clémentine Laurent et al.   PLANT MOLECULAR BIOLOGY

Expression of the ZNT1 Zinc Transporter from the Metal Hyperaccumulator Noccaea caerulescens Confers Enhanced Zinc and Cadmium Tolerance and Accumulation to Arabidopsis thaliana

(2016) Ya-Fen Lin et al.   PLoS One

The high-affinity metal Transporters NRAMP1 and IRT1 Team up to Take up Iron under Sufficient Metal Provision

(2016) Loren Castaings et al.   Scientific Reports

The Structure of Photosystem II and the Mechanism of Water Oxidation in Photosynthesis

(2015) Jian-Ren Shen   Annual Review of Plant Biology

Intraspecific variability of cadmium tolerance and accumulation, and cadmium-induced cell wall modifications in the metal hyperaccumulator Arabidopsis halleri

(2015) Claire-Lise Meyer et al.   JOURNAL OF EXPERIMENTAL BOTANY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Gene Expression Differences between Noccaea caerulescens Ecotypes Help to Identify Candidate Genes for Metal Phytoremediation

(2014) Pauliina Halimaa et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Role of early signalling events in plant-insect interactions

(2014) S. A. Zebelo et al.   JOURNAL OF EXPERIMENTAL BOTANY

OPT3 Is a Component of the Iron-Signaling Network between Leaves and Roots and Misregulation of OPT3 Leads to an Over-Accumulation of Cadmium in Seeds

(2014) David G. Mendoza-Cózatl et al.   Molecular Plant

OPT3 Is a Phloem-Specific Iron Transporter That Is Essential for Systemic Iron Signaling and Redistribution of Iron and Cadmium in Arabidopsis

(2014) Z. Zhai et al.   PLANT CELL

Root and shoot transcriptome analysis of two ecotypes ofNoccaea caerulescensuncovers the role ofNcNramp1in Cd hyperaccumulation

(2014) Matthew J. Milner et al.   PLANT JOURNAL

Functional analysis of the rice vacuolar zinc transporter OsMTP1

(2013) Paloma K. Menguer et al.   JOURNAL OF EXPERIMENTAL BOTANY

Feruloyl-CoA 6'-Hydroxylase1-Dependent Coumarins Mediate Iron Acquisition from Alkaline Substrates in Arabidopsis

(2013) N. B. Schmid et al.   PLANT PHYSIOLOGY

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Unravelling cadmium toxicity and tolerance in plants: Insight into regulatory mechanisms

(2012) Susana M. Gallego et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Amino acid screening based on structural modeling identifies critical residues for the function, ion selectivity and structure of Arabidopsis MTP1

(2012) Miki Kawachi et al.   FEBS Journal

Variation in HMA4 gene copy number and expression among Noccaea caerulescens populations presenting different levels of Cd tolerance and accumulation

(2012) Adrian R. Craciun et al.   JOURNAL OF EXPERIMENTAL BOTANY

Transport properties of members of the ZIP family in plants and their role in Zn and Mn homeostasis

(2012) Matthew J. Milner et al.   JOURNAL OF EXPERIMENTAL BOTANY

Characterization of the high affinity Zn transporter from Noccaea caerulescens, NcZNT1, and dissection of its promoter for its role in Zn uptake and hyperaccumulation

(2012) Matthew J. Milner et al.   NEW PHYTOLOGIST

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

The phytochelatin transporters AtABCC1 and AtABCC2 mediate tolerance to cadmium and mercury

(2011) Jiyoung Park et al.   PLANT JOURNAL

Elevated expression of TcHMA3 plays a key role in the extreme Cd tolerance in a Cd-hyperaccumulating ecotype of Thlaspi caerulescens

(2011) Daisei Ueno et al.   PLANT JOURNAL

Cadmium at high dose perturbs growth, photosynthesis and nitrogen metabolism while at low dose it up regulates sulfur assimilation and antioxidant machinery in garden cress (Lepidium sativum L.)

(2011) Sarvajeet Singh Gill et al.   PLANT SCIENCE

Tandem Quadruplication of HMA4 in the Zinc (Zn) and Cadmium (Cd) Hyperaccumulator Noccaea caerulescens

(2011) Seosamh Ó Lochlainn et al.   PLoS One

Cadmium stress: an oxidative challenge

(2010) Ann Cuypers et al.   BIOMETALS

The cellular redox state as a modulator in cadmium and copper responses in Arabidopsis thaliana seedlings

(2010) Ann Cuypers et al.   JOURNAL OF PLANT PHYSIOLOGY

High-Affinity Manganese Uptake by the Metal Transporter NRAMP1 Is Essential for Arabidopsis Growth in Low Manganese Conditions

(2010) R. Cailliatte et al.   PLANT CELL

Cadmium uptake and sequestration kinetics in individual leaf cell protoplasts of the Cd/Zn hyperaccumulator Thlaspi caerulescens

(2010) BARBARA LEITENMAIER et al.   PLANT CELL AND ENVIRONMENT

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

The NRAMP6 metal transporter contributes to cadmium toxicity

(2009) Rémy Cailliatte et al.   BIOCHEMICAL JOURNAL

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Ectopic expression of Arabidopsis ABC transporter MRP7 modifies cadmium root-to-shoot transport and accumulation

(2009) Sylwia Wojas et al.   ENVIRONMENTAL POLLUTION

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Transcriptional regulation of metal transport genes and mineral nutrition during acclimatization to cadmium and zinc in the Cd/Zn hyperaccumulator, Thlaspi caerulescens (Ganges population)

(2009) Hendrik Küpper et al.   NEW PHYTOLOGIST

Identification and functional analysis of two ZIP metal transporters of the hyperaccumulator Thlaspi caerulescens

(2009) Jian Wu et al.   PLANT AND SOIL

Metal movement within the plant: contribution of nicotianamine and yellow stripe 1-like transporters

(2008) Catherine Curie et al.   ANNALS OF BOTANY

Comparative analysis of CAX2-like cation transporters indicates functional and regulatory diversity

(2008) Clare Edmond et al.   BIOCHEMICAL JOURNAL

Evolution of metal hyperaccumulation required cis-regulatory changes and triplication of HMA4

(2008) Marc Hanikenne et al.   NATURE

Cadmium sorption, influx, and efflux at the mesophyll layer of leaves from ecotypes of the Zn/Cd hyperaccumulator Thlaspi caerulescens

(2008) Stephen D. Ebbs et al.   NEW PHYTOLOGIST

Functional characterization of NRAMP3 and NRAMP4 from the metal hyperaccumulator Thlaspi caerulescens

(2008) Ronald J. F. J. Oomen et al.   NEW PHYTOLOGIST

HMA P-type ATPases are the major mechanism for root-to-shoot Cd translocation in Arabidopsis thaliana

(2008) Chong Kum Edwin Wong et al.   NEW PHYTOLOGIST

Functional analysis of the heavy metal binding domains of the Zn/Cd-transporting ATPase, HMA2, in Arabidopsis thaliana

(2008) Chong Kum Edwin Wong et al.   NEW PHYTOLOGIST

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

AtHMA3, a P1B-ATPase Allowing Cd/Zn/Co/Pb Vacuolar Storage in Arabidopsis

(2008) M. Morel et al.   PLANT PHYSIOLOGY