Quantifying and comparing bacterial growth dynamics in multiple metagenomic samples
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Title
Quantifying and comparing bacterial growth dynamics in multiple metagenomic samples
Authors
Keywords
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Journal
NATURE METHODS
Volume 15, Issue 12, Pages 1041-1044
Publisher
Springer Nature
Online
2018-11-06
DOI
10.1038/s41592-018-0182-0
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- (2015) Dongwan D. Kang et al. PeerJ
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- (2010) Sophie Helaine et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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