Precision identification of diverse bloodstream pathogens in the gut microbiome
Published 2018 View Full Article
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Title
Precision identification of diverse bloodstream pathogens in the gut microbiome
Authors
Keywords
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Journal
NATURE MEDICINE
Volume 24, Issue 12, Pages 1809-1814
Publisher
Springer Nature
Online
2018-10-08
DOI
10.1038/s41591-018-0202-8
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Note: Only part of the references are listed.- Microbial strain-level population structure and genetic diversity from metagenomes
- (2017) Duy Tin Truong et al. GENOME RESEARCH
- metaSPAdes: a new versatile metagenomic assembler
- (2017) Sergey Nurk et al. GENOME RESEARCH
- Integrated meta-omic analyses of the gastrointestinal tract microbiome in patients undergoing allogeneic hematopoietic stem cell transplantation
- (2017) Anne Kaysen et al. Translational Research
- metaSNV: A tool for metagenomic strain level analysis
- (2017) Paul Igor Costea et al. PLoS One
- An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography
- (2016) Stephen Nayfach et al. GENOME RESEARCH
- Measurement of bacterial replication rates in microbial communities
- (2016) Christopher T Brown et al. NATURE BIOTECHNOLOGY
- ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data
- (2016) Guangchuang Yu et al. Methods in Ecology and Evolution
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota
- (2015) David J. Roach et al. PLoS Genetics
- Etiology, clinical features and outcomes of pre-engraftment and post-engraftment bloodstream infection in hematopoietic SCT recipients
- (2014) C Gudiol et al. BONE MARROW TRANSPLANTATION
- Improved annotation of antibiotic resistance determinants reveals microbial resistomes cluster by ecology
- (2014) Molly K Gibson et al. ISME Journal
- Fecal colonization and infection withPseudomonas aeruginosain recipients of allogeneic hematopoietic stem cell transplantation
- (2014) L. Nesher et al. Transplant Infectious Disease
- SRST2: Rapid genomic surveillance for public health and hospital microbiology labs
- (2014) Michael Inouye et al. Genome Medicine
- Overall burden of bloodstream infection and nosocomial bloodstream infection in North America and Europe
- (2013) M. Goto et al. CLINICAL MICROBIOLOGY AND INFECTION
- Leukemia and risk of recurrent Escherichia coli bacteremia: genotyping implicates E. coli translocation from the colon to the bloodstream
- (2013) A. Samet et al. EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES
- Genetic variation of a bacterial pathogen within individuals with cystic fibrosis provides a record of selective pressures
- (2013) Tami D Lieberman et al. NATURE GENETICS
- Incidence, risk factors, and outcome of bloodstream infections during the pre-engraftment phase in 521 allogeneic hematopoietic stem cell transplantations
- (2013) O. Blennow et al. Transplant Infectious Disease
- Snakemake--a scalable bioinformatics workflow engine
- (2012) J. Koster et al. BIOINFORMATICS
- Intestinal Domination and the Risk of Bacteremia in Patients Undergoing Allogeneic Hematopoietic Stem Cell Transplantation
- (2012) Ying Taur et al. CLINICAL INFECTIOUS DISEASES
- Distribution of Pathogens in Central Line–Associated Bloodstream Infections among Patients with and without Neutropenia following Chemotherapy Evidence for a Proposed Modification to the Current Surveillance Definition
- (2012) James P. Steinberg et al. INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Emergence of carbapenem-resistant Enterobacteriaceae as causes of bloodstream infections in patients with hematologic malignancies
- (2012) Michael J. Satlin et al. LEUKEMIA & LYMPHOMA
- Tracking a Hospital Outbreak of Carbapenem-Resistant Klebsiella pneumoniae with Whole-Genome Sequencing
- (2012) E. S. Snitkin et al. Science Translational Medicine
- BamTools: a C++ API and toolkit for analyzing and managing BAM files
- (2011) D. W. Barnett et al. BIOINFORMATICS
- Genome-wide recombination drives diversification of epidemic strains of Acinetobacter baumannii
- (2011) E. S. Snitkin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- phangorn: phylogenetic analysis in R
- (2010) Klaus Peter Schliep BIOINFORMATICS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Vancomycin-resistant Enterococcus domination of intestinal microbiota is enabled by antibiotic treatment in mice and precedes bloodstream invasion in humans
- (2010) Carles Ubeda et al. JOURNAL OF CLINICAL INVESTIGATION
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Blood Stream Infections in Allogeneic Hematopoietic Stem Cell Transplant Recipients: Reemergence of Gram-Negative Rods and Increasing Antibiotic Resistance
- (2009) Malgorzata Mikulska et al. BIOLOGY OF BLOOD AND MARROW TRANSPLANTATION
- Clinical Practice Guidelines for the Diagnosis and Management of Intravascular Catheter‐Related Infection: 2009 Update by the Infectious Diseases Society of America
- (2009) Leonard A. Mermel et al. CLINICAL INFECTIOUS DISEASES
- Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths
- (2009) Marie Touchon et al. PLoS Genetics
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