Parallel evolution of gene classes, but not genes: Evidence from Hawai'ian honeycreeper populations exposed to avian malaria

The Evolutionary History of Nebraska Deer Mice: Local Adaptation in the Face of Strong Gene Flow

(2018) Susanne P Pfeifer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Many-to-one form-to-function mapping weakens parallel morphological evolution

(2017) Cole J. Thompson et al.   EVOLUTION

Signatures of selection in mammalian clock genes with coding trinucleotide repeats: Implications for studying the genomics of high-pace adaptation

(2017) Melanie B. Prentice et al.   Ecology and Evolution

Characterization of class II β chain major histocompatibility complex genes in a family of Hawaiian honeycreepers: ‘amakihi (Hemignathus virens)

(2016) Susan I. Jarvi et al.   IMMUNOGENETICS

Geographic cline analysis as a tool for studying genome-wide variation: a case study of pollinator-mediated divergence in a monkeyflower

(2016) Sean Stankowski et al.   MOLECULAR ECOLOGY

Chromosomal inversions and ecotypic differentiation inAnopheles gambiae: the perspective from whole-genome sequencing

(2016) R. Rebecca Love et al.   MOLECULAR ECOLOGY

High-quality full-length immunoglobulin profiling with unique molecular barcoding

(2016) M A Turchaninova et al.   Nature Protocols

Resistance in persisting bat populations after white-nose syndrome invasion

(2016) Kate E. Langwig et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Rapid evolutionary response to a transmissible cancer in Tasmanian devils

(2016) Brendan Epstein et al.   Nature Communications

Collapsing avian community on a Hawaiian island

(2016) E. H. Paxton et al.   Science Advances

Reliable Detection of Loci Responsible for Local Adaptation: Inference of a Null Model through Trimming the Distribution of FST

(2015) Michael C. Whitlock et al.   AMERICAN NATURALIST

Disease alters macroecological patterns of North American bats

(2015) Winifred F. Frick et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Contemporary evolution during invasion: evidence for differentiation, natural selection, and local adaptation

(2015) Robert I. Colautti et al.   MOLECULAR ECOLOGY

PANTHER version 10: expanded protein families and functions, and analysis tools

(2015) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Large-Scale Range Collapse of Hawaiian Forest Birds under Climate Change and the Need 21st Century Conservation Options

(2015) Lucas B. Fortini et al.   PLoS One

A forward genetic screen identifies erythrocyte CD55 as essential for Plasmodium falciparum invasion

(2015) E. S. Egan et al.   SCIENCE

Hidden costs of infection: Chronic malaria accelerates telomere degradation and senescence in wild birds

(2015) M. Asghar et al.   SCIENCE

Spatially variable coevolution between a haemosporidian parasite and the MHC of a widely distributed passerine

(2015) Matthew R. Jones et al.   Ecology and Evolution

Avian malaria in Hawaiian forest birds: infection and population impacts across species and elevations

(2015) Michael D. Samuel et al.   Ecosphere

The Effect of Immunodeficiency on the Evolution of Virulence: An Experimental Test with the Rodent Malaria Plasmodium chabaudi

(2014) Victoria C. Barclay et al.   AMERICAN NATURALIST

The Molecular Basis of Phenotypic Convergence

(2014) Erica Bree Rosenblum et al.   Annual Review of Ecology Evolution and Systematics

Genomic resources for the endangered Hawaiian honeycreepers

(2014) Taylor Callicrate et al.   BMC GENOMICS

Experimental Evidence for Evolved Tolerance to Avian Malaria in a Wild Population of Low Elevation Hawai‘i ‘Amakihi (Hemignathus virens)

(2014) Carter T. Atkinson et al.   EcoHealth

Variation in positively selected major histocompatibility complex class I loci in rufous-collared sparrows (Zonotrichia capensis)

(2014) Matthew R. Jones et al.   IMMUNOGENETICS

Contemporary ecotypic divergence during a recent range expansion was facilitated by adaptive introgression

(2014) K. Lucek et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Evaluation of demographic history and neutral parameterization on the performance ofFSToutlier tests

(2014) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

CONVERGENCE AND DIVERGENCE DURING THE ADAPTATION TO SIMILAR ENVIRONMENTS BY AN AUSTRALIAN GROUNDSEL

(2013) Federico Roda et al.   EVOLUTION

Large-scale gene function analysis with the PANTHER classification system

(2013) Huaiyu Mi et al.   Nature Protocols

Protein genes in repetitive sequence—antifreeze glycoproteins in Atlantic cod genome

(2012) Xuan Zhuang et al.   BMC GENOMICS

Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of Lake Victoria cichlid fishes

(2012) I. Keller et al.   MOLECULAR ECOLOGY

Rapid evolution of an adaptive cyanogenesis cline in introduced North American white clover (Trifolium repensL.)

(2012) NICHOLAS J. KOOYERS et al.   MOLECULAR ECOLOGY

The genomic basis of adaptive evolution in threespine sticklebacks

(2012) Felicity C. Jones et al.   NATURE

Contrasting Epidemic Histories Reveal Pathogen-Mediated Balancing Selection on Class II MHC Diversity in a Wild Songbird

(2012) Dana M. Hawley et al.   PLoS One

The Evolutionary Consequences of Blood-Stage Vaccination on the Rodent Malaria Plasmodium chabaudi

(2012) Victoria C. Barclay et al.   PLOS BIOLOGY

Beyond Junk-Variable Tandem Repeats as Facilitators of Rapid Evolution of Regulatory and Coding Sequences

(2012) Rita Gemayel et al.   Genes

PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs

(2011) H. E. L. Lischer et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Multilocus Resolution of Phylogeny and Timescale in the Extant Adaptive Radiation of Hawaiian Honeycreepers

(2011) Heather R.L. Lerner et al.   CURRENT BIOLOGY

THE GENETIC ARCHITECTURE OF ADAPTATION UNDER MIGRATION-SELECTION BALANCE

(2011) Sam Yeaman et al.   EVOLUTION

Population genetics of malaria resistance in humans

(2011) P W Hedrick   HEREDITY

Rapid evolution of disease resistance is accompanied by functional changes in gene expression in a wild bird

(2011) C. Bonneaud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MHC genotypes associate with resistance to a frog-killing fungus

(2011) A. E. Savage et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Resistance to Plague Among Black-Tailed Prairie Dog Populations

(2011) Tonie E. Rocke et al.   VECTOR-BORNE AND ZOONOTIC DISEASES

Signatures of Environmental Genetic Adaptation Pinpoint Pathogens as the Main Selective Pressure through Human Evolution

(2011) Matteo Fumagalli et al.   PLoS Genetics

Thermal Constraints to the Sporogonic Development and Altitudinal Distribution of Avian Malaria Plasmodium relictum in Hawai'i

(2010) Dennis A. LaPointe et al.   JOURNAL OF PARASITOLOGY

Genetic structure along an elevational gradient in Hawaiian honeycreepers reveals contrasting evolutionary responses to avian malaria

(2009) Lori S Eggert et al.   BMC EVOLUTIONARY BIOLOGY

Global distribution of genomic diversity underscores rich complex history of continental human populations

(2009) A. Auton et al.   GENOME RESEARCH

Introduced Avian Diseases, Climate Change, and the Future of Hawaiian Honeycreepers

(2009) Carter T. Atkinson et al.   JOURNAL OF AVIAN MEDICINE AND SURGERY

Molecular and functional basis of phenotypic convergence in white lizards at White Sands

(2009) E. B. Rosenblum et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Malaria primes the innate immune response due to interferon-  induced enhancement of toll-like receptor expression and function

(2009) B. S. Franklin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Adaptive Evolution of Pelvic Reduction in Sticklebacks by Recurrent Deletion of a Pitx1 Enhancer

(2009) Y. F. Chan et al.   SCIENCE

A Genome-Scan Method to Identify Selected Loci Appropriate for Both Dominant and Codominant Markers: A Bayesian Perspective

(2008) M. Foll et al.   GENETICS

The Resistance of BALB/cJ Mice to Yersinia pestis Maps to the Major Histocompatibility Complex of Chromosome 17

(2008) J. K. Turner et al.   INFECTION AND IMMUNITY

Avian defensins

(2008) Albert van Dijk et al.   VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources