Article
Infectious Diseases
Ayse Oen, Djenana Vejzovic, James Jennings, Lena Parigger, Robert A. Cordfunke, Jan Wouter Drijfhout, Karl Lohner, Nermina Malanovic
Summary: OP-145 and SAAP-148, derived from LL-37, show effective killing against both Gram-positive and Gram-negative bacteria. However, their impact on Escherichia coli does not align with membrane permeabilization. In this study, we used a combination of techniques to investigate their mode of action and found distinct binding patterns and permeabilization effects depending on the LPS phenotypes. Our findings suggest that depolarization of the cytoplasmic membrane and disruption of lipid packing are crucial for their bactericidal activity.
Article
Nanoscience & Nanotechnology
Yunhui Zhu, Yinghan Xu, Jianming Yan, Yuxin Fang, Na Dong, Anshan Shan
Summary: The study designed a series of antimicrobial peptides with immunostimulatory and bacteria-killing activities using a chemotactic motif. Among them, KWH2 exhibited potent antimicrobial activity against Gram-negative bacteria and activated macrophages. The study also provided insights into the mechanisms and possible approaches for developing immunomodulatory antimicrobial materials with desired properties.
ACS APPLIED MATERIALS & INTERFACES
(2023)
Article
Biochemistry & Molecular Biology
Federica Armas, Adriana Di Stasi, Mario Mardirossian, Antonello A. Romani, Monica Benincasa, Marco Scocchi
Summary: The study tested two different lipidated forms of Bac7(1-16) aimed at extending its activity against bacterial species lacking SbmA. Both lipidated forms showed activity against Gram-positive and Gram-negative bacteria at low micromolar MIC values. These results suggest that C-terminal lipidation alters the function and mode of action of a short proline-rich peptide, providing insights into the design of broad-spectrum antibacterial agents.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Biochemistry & Molecular Biology
Ingrid A. Edwards, Sonia T. Henriques, Mark A. T. Blaskovich, Alysha G. Elliott, Matthew A. Cooper
Summary: In this study, the mechanism of action of arenicin-3 and its synthetic analogue AA139 were investigated. The results showed that simple amino acid changes can affect their interaction with membranes, leading to changes in their potency, selectivity, and toxicity. AA139 demonstrated improved antibacterial activity and lower toxicity compared to arenicin-3, possibly due to its specific binding and insertion properties.
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS
(2022)
Review
Chemistry, Multidisciplinary
Tracey Luu, Wenyi Li, Neil M. O'Brien-Simpson, Yuning Hong
Summary: AMPs are being intensively researched as promising alternatives to antibiotics due to the emergence of antimicrobial resistance. Development of fluorescent probes, particularly AIE probes, has facilitated the understanding of AMPs mechanisms and properties, sparking increased interest in using AIE probes for AMP studies.
CHEMISTRY-AN ASIAN JOURNAL
(2021)
Article
Polymer Science
Wenwen Li, Che Zhang, Xuemei Lu, Shuqing Sun, Kai Yang, Bing Yuan
Summary: In this study, a new type of nanocomposite, composed of polymyxin B (PMB) molecules being chemically decorated on the surface of graphene oxide (GO) nanosheets, was designed to improve the antibacterial performance of PMB. The nanocomposite showed potent antibacterial ability by disturbing the bacterial membrane. The results demonstrate the potential of developing advanced antibacterial agents using this physical mechanism.
Article
Biochemistry & Molecular Biology
Paulina Piller, Heimo Wolinski, Robert A. Cordfunke, Jan Wouter Drijfhout, Sandro Keller, Karl Lohner, Nermina Malanovic
Summary: The development of antimicrobial agents against multidrug-resistant bacteria is crucial in the medical field. This study found that SAAP-148, an antimicrobial peptide, showed higher efficiency in killing bacteria and had stronger effects on membranes at both cellular and molecular levels compared to OP-145.
Article
Biochemistry & Molecular Biology
Gabriel Bonan Taveira, Erica de Oliveira Mello, Thatiana Lopes Bia Ventura Simao, Milena Bellei Cherene, Andre de Oliveira Carvalho, Michelle Frazao Muzitano, Elena Lassounskaia, Saulo Pireda, Emilio de Castro Miguel, Luis Guilherme Mansor Basso, Maura Da Cunha, Olney Vieira da Motta, Valdirene Moreira Gomes
Summary: This study investigates the antimicrobial and cytotoxic activities of a new antimicrobial peptide CaDef2.1(G27-K44) against Candida spp. and Mycobacterium tuberculosis. The results demonstrate that CaDef2.1(G27-K44) exhibits potent antimicrobial activity with low cytotoxicity to mammalian cells.
BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS
(2022)
Article
Environmental Sciences
Yijing Han, Gege Hu, Yuying Chen, Lizhu Chen, Daode Yu, Qianqian Zhang, Dinglong Yang
Summary: The study found that hemocytes of Manila clams release the antimicrobial defensin Rpdef3 in response to Vibrio parahaemolyticus challenge, which is involved in the formation of extracellular traps to eliminate invading bacteria. Rpdef3 has broad-spectrum antimicrobial effects on both Gram-negative and Gram-positive bacteria by binding to lipopolysaccharides and peptidoglycan, leading to bacterial cell death through membrane permeabilization. This suggests that the formation of extracellular traps is a defense mechanism triggered by bacterial stimulation, coupled with the antibacterial defensin Rpdef3.
FRONTIERS IN MARINE SCIENCE
(2021)
Article
Oncology
Lin Zhang, Guang-Zhi Jin, Dong Li
Summary: A novel endogenous peptide derived from HSPB1 protein, Tat-hspb1, was discovered to inhibit the proliferation and migration of ccRCC cells with lower cytotoxicity to normal cells, suggesting its potential as a therapeutic agent for renal cancer.
Article
Biochemistry & Molecular Biology
Hyunhee Lee, Sung-Heui Shin, Sungtae Yang
Summary: PMAP-NC, derived from PMAP-23, has improved bactericidal activity against both Gram-positive and Gram-negative strains with fast killing kinetics. It also exhibits better anticancer activity against tumor cells and low hemolytic activity against human erythrocytes.
Article
Biochemistry & Molecular Biology
Yujia Zhou, Xingtao Zhou, Tao Hong, Wucheng Qi, Ke Zhang, Fang Geng, Shaoping Nie
Summary: Tea polysaccharides (TPs) inhibit the proliferation of colon cancer cells CT26 by targeting lysosomes and inducing apoptosis, mainly through disrupting lysosome function, causing mitochondrial damage, and activating caspase cascade.
Article
Biotechnology & Applied Microbiology
Morgan A. Hitchner, Matthew R. Necelis, Devanie Shirley, Gregory A. Caputo
Summary: Antimicrobial peptides (AMPs) have high selectivity and are widely studied for their activity against bacterial targets. This study explored the impact of amino acid substitutions on peptide activity, finding that non-natural amino acid substitutions can enhance antimicrobial activity. Additionally, peptides exhibited deeper binding to anionic lipids and stronger bacterial membrane disruption, with a promising peptide showing high activity and low hemolysis levels.
PROBIOTICS AND ANTIMICROBIAL PROTEINS
(2021)
Article
Microbiology
Bruna Agrillo, Alessandra Porritiello, Lorena Gratino, Marco Balestrieri, Yolande Therese Proroga, Andrea Mancusi, Loredana Cozzi, Teresa Vicenza, Principia Dardano, Bruno Miranda, Pablo V. Escriba, Marta Gogliettino, Gianna Palmieri
Summary: This study investigated the structural and functional characteristics of lysine-to-arginine substitution in antimicrobial peptides (AMPs), and reported the properties of a new RiLK1 derivative named RiLK3. The results showed that lysine-to-arginine replacement not only did not improve the antimicrobial activity of RiLK1, but completely abolished its activity against the hepatitis A virus. Therefore, the substitution of lysine with arginine has complex effects on antimicrobial efficacy and selectivity.
FRONTIERS IN MICROBIOLOGY
(2023)
Article
Pharmacology & Pharmacy
Tomislav Roncevic, Matko Males, Yogesh Sonavane, Filomena Guida, Sabrina Pacor, Alessandro Tossi, Larisa Zoranic
Summary: Kiadins are peptides that resemble diPGLa-H and have varying activity and selectivity against bacteria, as well as cytotoxicity against host cells, depending on the number and placement of glycine residues. Molecular dynamics simulations reveal that the conformational flexibility introduced by glycine substitutions affects peptide structure and interactions with model membranes.
Article
Microbiology
M. Workentine, A. Poonja, B. Waddell, J. Duong, D. G. Storey, D. Gregson, R. Somayaji, H. R. Rabin, M. G. Surette, M. D. Parkins
JOURNAL OF CLINICAL MICROBIOLOGY
(2016)
Article
Microbiology
Taylor E. Woo, Jessica Duong, Nicole M. Jervis, Harvey R. Rabin, Michael D. Parkins, Douglas G. Storey
Article
Multidisciplinary Sciences
Alya Heirali, Suzanne McKeon, Swathi Purighalla, Douglas G. Storey, Laura Rossi, Geoffrey Costilhes, Steven J. Drews, Harvey R. Rabin, Michael G. Surette, Michael D. Parkins
Article
Microbiology
B. D. Edwards, J. Greysson-Wong, R. Somayaji, B. Waddell, F. J. Whelan, D. G. Storey, H. R. Rabin, M. G. Surette, M. D. Parkins
JOURNAL OF CLINICAL MICROBIOLOGY
(2017)
Article
Respiratory System
Ali Poonja, Alya Heirali, Matthew Workentine, Douglas G. Storey, Ranjani Somayaji, Harvey R. Rabin, Michael G. Surette, Michael D. Parkins
JOURNAL OF CYSTIC FIBROSIS
(2017)
Article
Multidisciplinary Sciences
Katharine Victoria Jensen, Orsolya Cseh, Ahmed Aman, Samuel Weiss, Hema Artee Luchman
Article
Multidisciplinary Sciences
Hiroaki Ishida, Katharine V. Jensen, Andrew G. Woodman, M. Eric Hyndman, Hans J. Vogel
SCIENTIFIC REPORTS
(2017)
Article
Microbiology
Alya A. Heirali, Matthew L. Workentine, Nicole Acosta, Ali Poonja, Douglas G. Storey, Ranjani Somayaji, Harvey R. Rabin, Fiona J. Whelan, Michael G. Surette, Michael D. Parkins
Article
Respiratory System
Alya A. Heirali, Nicole Acosta, Douglas G. Storey, Matthew L. Workentine, Ranjani Somayaji, Isabelle Laforest-Lapointe, Winnie Leung, Bradley S. Quon, Yves Berthiaume, Harvey R. Rabin, Barbara J. Waddell, Laura Rossi, Michael G. Surette, Michael D. Parkins
JOURNAL OF CYSTIC FIBROSIS
(2019)
Article
Multidisciplinary Sciences
T. E. Woo, R. Lim, A. A. Heirali, N. Acosta, H. R. Rabin, C. H. Mody, R. Somayaji, M. G. Surette, C. D. Sibley, D. G. Storey, M. D. Parkins
SCIENTIFIC REPORTS
(2019)
Article
Respiratory System
Sen Han Phang, Jasper Greysson-Wong, Ranjani Somayaji, Douglas G. Storey, Harvey R. Rabin, Michael G. Surette, Michael Parkins
CANADIAN JOURNAL OF RESPIRATORY CRITICAL CARE AND SLEEP MEDICINE
(2019)
Article
Respiratory System
Taylor E. Woo, Rachel Lim, Michael G. Surette, Barbara Waddell, Joel C. Bowron, Ranjani Somayaji, Jessica Duong, Christopher H. Mody, Harvey R. Rabin, Douglas G. Storey, Michael D. Parkins
Article
Microbiology
Joey S. Lockhart, Andre G. Buret, Howard Ceri, Douglas G. Storey, Stefanie J. Anderson, Douglas W. Morck
Review
Biochemical Research Methods
Travis S. Bingeman, David H. Perlman, Douglas G. Storey, Ian A. Lewis
CURRENT OPINION IN BIOTECHNOLOGY
(2017)
Article
Biochemistry & Molecular Biology
Philipp Grad, Katarina Edwards, Lars Gedda, Victor Agmo Hernandez
Summary: This study investigates the effects of polyethylene glycol-(PEG) modified lipids and gangliosides on the Ca2+ induced interaction between liposomes composed of palmitoyl-oleoyl phosphatidylethanolamine (POPE) and palmitoyl-oleoyl phosphatidylserine (POPS) at physiological ionic strength. The results show that naked liposomes tend to adhere, rupture, and collapse on each other's surfaces upon addition of Ca2+, eventually resulting in the formation of large multilamellar aggregates and bilayer sheets. However, the presence of gangliosides or PEGylated lipids leads to the formation of small, long-lived bilayer fragments/disks. PEGylated lipids seem to be more effective than gangliosides at stabilizing these structures. The study suggests that direct liposome-liposome fusion is not the dominating process triggered by Ca2+ in the systems studied.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Saurabh Saraswat, Archana Chugh
Summary: Cell penetrating peptides (CPP) are important tools for intracellular delivery of molecules. In this study, a novel marine-derived CPP from Engraulis japonicus, called Engraulisin, was reported. Engraulisin demonstrated successful cellular uptake and selective antimicrobial activity against Methicillin-resistant Staphylococcus aureus (MRSA), making it a potential candidate for drug delivery.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Emanuela Efodili, Ashlynn Knight, Maryem Mirza, Cedric Briones, Il-Hyung Lee
Summary: This study demonstrates the spontaneous transfer of small membrane-bound peptides between a supported lipid bilayer and giant unilamellar vesicles in vitro. The transfer occurs through the formation of hemi-fusion stalks and is limited to small peptides due to the highly curved structure of the stalk. This system provides a synthetic platform for studying peptide trafficking between synthetic membranes.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Yueqi Niu, Si Jia Chen, Jeffery B. Klauda
Summary: Macrophage membranes in the activated state are more tightly packed, exhibit increased chain order across lipid species, and form specific lipid clusters. These findings provide physiologically accurate models for future computational studies of macrophage membranes and their proteins.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Niki Baccile, Vincent Chaleix, Ingo Hoffmann
Summary: This study measured the bending rigidity of self-assembled structures formed by a new biobased glucolipid bioamphiphile using neutron spin-echo (NSE) technology. The results showed that the bending rigidity of these structures is lower or higher compared to phospholipid membranes, providing a new theoretical basis for the application of these new molecular systems.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Alain Bolano Alvares, Pablo E. A. Rodriguez, Gerardo D. Fidelio
Summary: The behavior of amphiphilic molecules at the air/water interface was studied to evaluate the arrangement formed in a confined area. The surface properties of zwitterionic DPPC lipid and A beta(1-40) amyloid peptide in mixed films were investigated at different temperatures. DPPC undergoes a phase transition depending on temperature and lateral pressure, which allows for the study of its influence on amyloid structure formation.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Lukasz Plachta, Marzena Mach, Magdalena Kowalska, Pawel Wydro
Summary: Resveratrol, a popular phytoalexin found in grapes and red wine, has beneficial effects on the cardiovascular system, exhibits antiviral, antibacterial, and antifungal properties, and may have therapeutic effects against cancer. This study investigates the interaction of resveratrol with model cell membranes, demonstrating changes in their physicochemical parameters and highlighting the role of cholesterol content in resveratrol incorporation. The findings suggest that the molecular mechanism of action of resveratrol may involve interactions with lipid rafts.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Edurne Rujas, Beatriz Apellaniz, Johana Torralba, David Andreu, Jose M. M. Caaveiro, Shixia Wang, Shan Lu, Jose L. Nieva
Summary: This study investigates the role of fusion peptide and Trp-rich membrane proximal external region in HIV-1 fusion and demonstrates that liposome-based formulations containing FP-MPER hybrid peptides can induce the production of specific neutralizing antibodies in rabbits. The results support the use of liposomes as vaccine carriers and the inclusion of lipid membranes in immunogens to elicit specific humoral responses.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Dailin Li, Dingyuan Shi, Lei Wang
Summary: G protein-gated inwardly rectifying potassium (GIRK) channels play a significant role in regulating cell excitability. This study investigated the ion permeation mechanism in GIRK2 mutants using molecular dynamic simulations and QM/MM methods. The results revealed the importance of a multi-ion distribution for ion conduction.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Max J. den Uijl, Arnold J. M. Driessen
Summary: Membrane protein insertion into and translocation across the bacterial cytoplasmic membrane are essential processes facilitated by the Sec translocon. The phospholipid dependence of membrane protein insertion has remained mostly unknown. This study reveals that the insertion of the mannitol permease MtlA into the membrane depends on the presence of phosphatidylglycerol and is stimulated by phosphatidylethanolamine.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Patrick Allen, Adam C. Smith, Vernon Benedicto, Abbas Abdulhasan, Vasanthy Narayanaswami, Enrico Tapavicza
Summary: We explore the stability, size, and structure of nanodiscs formed by the N-terminal domain of apolipoprotein E3 and a variable number of 1,2-dimyristoyl-sn-glycero-3-phosphocholine molecules. Our simulations suggest that nanodiscs containing 240 to 420 DMPC molecules are stable. The antiparallel configuration shows more protein-protein interactions and ionic contacts, as well as greater stability and rigidity compared to the parallel configuration.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Patrick M. Keating, Nicholas P. Schifano, Xinrui Wei, Matthew Y. Kong, Jinwoo Lee
Summary: Lassa virus (LASV) infection is dependent on the fusion of its viral membrane with the host cell membrane, and our study reveals that this fusion process involves pH-dependent conformational changes in the transmembrane domain of LASV. These findings provide valuable insights into the fusion mechanism of LASV and can be utilized in the design of therapeutics to combat Lassa virus infections and prevent its potential spread.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Ashley L. Bennett, Kristen N. Cranford, Austin L. Bates, Christopher R. Sabatini, Hee-Seung Lee
Summary: This study employed molecular dynamics simulations to elucidate the binding, folding, and insertion details of TP10W in the cell membrane. The simulations revealed that TP10W can translocate across the lipid membrane as a monomer, and the charged amino acid side chains can move between lipid leaflets. Comparison with point mutated variants demonstrated significant conformational changes due to charge distribution.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Article
Biochemistry & Molecular Biology
Jessica H. van Wonderen, Jason C. Crack, Marcus J. Edwards, Thomas A. Clarke, Gerhard Saalbach, Carlo Martins, Julea N. Butt
Summary: Electrogenic bacteria transfer excess respiratory electrons to metal oxide particles and electrodes through the MtrCAB complex. The crystal structure of MtrCAB from S. baltica OS185 was resolved, and liquid chromatography mass spectrometry was used to determine the mass values of the three proteins in purified MtrCAB complexes.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)
Review
Biochemistry & Molecular Biology
Yi-Ming Chen, Ching-Tai Lu, Chia-Wen Wang, Wolfgang B. Fischer
Summary: A series of dye ligands were ranked based on docking experiments, selecting the most suitable ligands for binding with different proteins. Additionally, a comparison study was conducted on a series of repurposing drugs and known antivirals.
BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES
(2024)