A Genome-Wide Epstein-Barr Virus Polyadenylation Map and Its Antisense RNA to EBNA

CAGE-seq analysis of Epstein-Barr virus lytic gene transcription: 3 kinetic classes from 2 mechanisms

(2018) Reza Djavadian et al.   PLoS Pathogens

Continuous DNA replication is required for late gene transcription and maintenance of replication compartments in gammaherpesviruses

(2018) Dajiang Li et al.   PLoS Pathogens

Structural and Functional Basis for an EBNA1 Hexameric Ring in Epstein-Barr Virus Episome Maintenance

(2017) Julianna S. Deakyne et al.   JOURNAL OF VIROLOGY

Viral DNA Replication Orientation and hnRNPs Regulate Transcription of the Human Papillomavirus 18 Late Promoter

(2017) Xiaohong Wang et al.   mBio

A Temporal Proteomic Map of Epstein-Barr Virus Lytic Replication in B Cells

(2017) Ina Ersing et al.   Cell Reports

Global transcript structure resolution of high gene density genomes through multi-platform data integration

(2016) Tina O'Grady et al.   NUCLEIC ACIDS RESEARCH

EBV noncoding RNA EBER2 interacts with host RNA-binding proteins to regulate viral gene expression

(2016) Nara Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Consideration of Epstein-Barr Virus-Encoded Noncoding RNAs EBER1 and EBER2 as a Functional Backup of Viral Oncoprotein Latent Membrane Protein 1

(2016) Kristina M. Herbert et al.   mBio

Host Gene Expression Is Regulated by Two Types of Noncoding RNAs Transcribed from the Epstein-Barr Virus BamHI A Rightward Transcript Region

(2015) Aron R. Marquitz et al.   JOURNAL OF VIROLOGY

New Noncoding Lytic Transcripts Derived from the Epstein-Barr Virus Latency Origin of Replication,oriP, Are Hyperedited, Bind the Paraspeckle Protein, NONO/p54nrb, and Support Viral Lytic Transcription

(2015) Subing Cao et al.   JOURNAL OF VIROLOGY

To Be or Not IIb: A Multi-Step Process for Epstein-Barr Virus Latency Establishment and Consequences for B Cell Tumorigenesis

(2015) Alexander M. Price et al.   PLoS Pathogens

Epstein-Barr Virus Late Gene Transcription Depends on the Assembly of a Virus-Specific Preinitiation Complex

(2014) V. Aubry et al.   JOURNAL OF VIROLOGY

Comprehensive molecular characterization of gastric adenocarcinoma

(2014) Adam J. Bass et al.   NATURE

RNA families in Epstein–Barr virus

(2014) Walter N Moss et al.   RNA Biology

Genome-wide identification and predictive modeling of tissue-specific alternative polyadenylation

(2013) D. Hafez et al.   BIOINFORMATICS

Distinct polyadenylation landscapes of diverse human tissues revealed by a modified PA-seq strategy

(2013) Ting Ni et al.   BMC GENOMICS

Interaction between Basic Residues of Epstein-Barr Virus EBNA1 Protein and Cellular Chromatin Mediates Viral Plasmid Maintenance

(2013) Teru Kanda et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Efficient Replication of Epstein-Barr Virus-Derived Plasmids Requires Tethering by EBNA1 to Host Chromosomes

(2013) Theresa L. Hodin et al.   JOURNAL OF VIROLOGY

Global Bidirectional Transcription of the Epstein-Barr Virus Genome during Reactivation

(2013) T. O'Grady et al.   JOURNAL OF VIROLOGY

A Viral Genome Landscape of RNA Polyadenylation from KSHV Latent to Lytic Infection

(2013) Vladimir Majerciak et al.   PLoS Pathogens

An Atlas of the Epstein-Barr Virus Transcriptome and Epigenome Reveals Host-Virus Regulatory Interactions

(2012) Aaron Arvey et al.   Cell Host & Microbe

Whole-Genome Sequencing of the Akata and Mutu Epstein-Barr Virus Strains

(2012) Z. Lin et al.   JOURNAL OF VIROLOGY

The EBV Immunoevasins vIL-10 and BNLF2a Protect Newly Infected B Cells from Immune Recognition and Elimination

(2012) Simon Jochum et al.   PLoS Pathogens

Epstein-Barr Virus LMP2A Reduces Hyperactivation Induced by LMP1 to Restore Normal B Cell Phenotype in Transgenic Mice

(2012) Alexandra C. Vrazo et al.   PLoS Pathogens

Coupled transcriptome and proteome analysis of human lymphotropic tumor viruses: insights on the detection and discovery of viral genes

(2011) Lindsay R Dresang et al.   BMC GENOMICS

Conserved Herpesvirus Kinases Target the DNA Damage Response Pathway and TIP60 Histone Acetyltransferase to Promote Virus Replication

(2011) Renfeng Li et al.   Cell Host & Microbe

Construction of a Full Transcription Map of Human Papillomavirus Type 18 during Productive Viral Infection

(2011) X. Wang et al.   JOURNAL OF VIROLOGY

Identification of New Viral Genes and Transcript Isoforms during Epstein-Barr Virus Reactivation using RNA-Seq

(2011) M. Concha et al.   JOURNAL OF VIROLOGY

A Viral microRNA Cluster Strongly Potentiates the Transforming Properties of a Human Herpesvirus

(2011) Regina Feederle et al.   PLoS Pathogens

EBV Tegument Protein BNRF1 Disrupts DAXX-ATRX to Activate Viral Early Gene Transcription

(2011) Kevin Tsai et al.   PLoS Pathogens

Signals for pre-mRNA cleavage and polyadenylation

(2011) Bin Tian et al.   Wiley Interdisciplinary Reviews-RNA

Comprehensive Polyadenylation Site Maps in Yeast and Human Reveal Pervasive Alternative Polyadenylation

(2010) Fatih Ozsolak et al.   CELL

Quantitative and Qualitative RNA-Seq-Based Evaluation of Epstein-Barr Virus Transcription in Type I Latency Burkitt's Lymphoma Cells

(2010) Z. Lin et al.   JOURNAL OF VIROLOGY

The Lytic Transcriptome of Kaposi's Sarcoma-Associated Herpesvirus Reveals Extensive Transcription of Noncoding Regions, Including Regions Antisense to Important Genes

(2010) S. Chandriani et al.   JOURNAL OF VIROLOGY

Initiation of Epstein-Barr Virus Lytic Replication Requires Transcription and the Formation of a Stable RNA-DNA Hybrid Molecule at OriLyt

(2010) A. J. Rennekamp et al.   JOURNAL OF VIROLOGY

Formation, regulation and evolution of Caenorhabditis elegans 3′UTRs

(2010) Calvin H. Jan et al.   NATURE

A paired-end sequencing strategy to map the complex landscape of transcription initiation

(2010) Ting Ni et al.   NATURE METHODS

The Landscape of C. elegans 3'UTRs

(2010) M. Mangone et al.   SCIENCE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Self-Assembly of Epstein-Barr Virus Capsids

(2009) B. W. Henson et al.   JOURNAL OF VIROLOGY

The Epstein-Barr virus (EBV) protein EB is an mRNA export factor essential for virus production

(2008) Alain Sergeant   Frontiers in Bioscience-Landmark

The Epstein–Barr virus BMRF-2 protein facilitates virus attachment to oral epithelial cells

(2007) Jianqiao Xiao et al.   VIROLOGY