Systems model-guided rice yield improvements based on genes controlling source, sink, and flow

Next-generation strategies for understanding and influencing source–sink relations in crop plants

(2018) Uwe Sonnewald et al.   CURRENT OPINION IN PLANT BIOLOGY

Control of Grain Size and Weight by the OsMKKK10-OsMKK4-OsMAPK6 Signaling Pathway in Rice

(2018) Ran Xu et al.   Molecular Plant

Tissue-Specific Ubiquitination by IPA1 INTERACTING PROTEIN1 Modulates IPA1 Protein Levels to Regulate Plant Architecture in Rice

(2017) Jing Wang et al.   PLANT CELL

The impact of modifying photosystem antenna size on canopy photosynthetic efficiency-Development of a new canopy photosynthesis model scaling from metabolism to canopy level processes

(2017) Qingfeng Song et al.   PLANT CELL AND ENVIRONMENT

MiR408 Regulates Grain Yield and Photosynthesis via a Phytocyanin Protein

(2017) Jin-Ping Zhang et al.   PLANT PHYSIOLOGY

Transcription Factor OsWRKY53 Positively Regulates Brassinosteroid Signaling and Plant Architecture

(2017) Xiaojie Tian et al.   PLANT PHYSIOLOGY

LATERAL FLORET 1induced the three-florets spikelet in rice

(2017) Ting Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A new canopy photosynthesis and transpiration measurement system (CAPTS) for canopy gas exchange research

(2016) Qingfeng Song et al.   AGRICULTURAL AND FOREST METEOROLOGY

Photosynthetic and agronomic traits of an elite hybrid rice Y-Liang-You 900 with a record-high yield

(2016) Shuoqi Chang et al.   FIELD CROPS RESEARCH

Semi-Rolled Leaf2modulates rice leaf rolling by regulating abaxial side cell differentiation

(2016) Xiaofei Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

OsWOX3A is involved in negative feedback regulation of the gibberellic acid biosynthetic pathway in rice (Oryza sativa)

(2016) Sung-Hwan Cho et al.   JOURNAL OF EXPERIMENTAL BOTANY

NARROW AND ROLLED LEAF 2regulates leaf shape, male fertility, and seed size in rice

(2016) Shuangshuang Zhao et al.   Journal of Integrative Plant Biology

Hd1,aCONSTANSortholog in rice, functions as anEhd1repressor through interaction with monocot-specific CCT-domain protein Ghd7

(2016) Yasue Nemoto et al.   PLANT JOURNAL

Improving photosynthesis and crop productivity by accelerating recovery from photoprotection

(2016) Johannes Kromdijk et al.   SCIENCE

Recent progress on the genetics and molecular breeding of brown planthopper resistance in rice

(2016) Jie Hu et al.   Rice

MicroRNA393 is involved in nitrogen-promoted rice tillering through regulation of auxin signal transduction in axillary buds

(2016) Xiang Li et al.   Scientific Reports

The QTL GNP1 Encodes GA20ox1, Which Increases Grain Number and Yield by Increasing Cytokinin Activity in Rice Panicle Meristems

(2016) Yuan Wu et al.   PLoS Genetics

Breeding high-yield superior quality hybrid super rice by rational design

(2016) Qian Qian et al.   National Science Review

Genetics-based dynamic systems model of canopy photosynthesis: the key to improve light and resource use efficiencies for crops

(2016) Qingfeng Song et al.   Food and Energy Security

Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice

(2016) Xufeng Bai et al.   Scientific Reports

Meeting the Global Food Demand of the Future by Engineering Crop Photosynthesis and Yield Potential

(2015) Stephen P. Long et al.   CELL

Current Understanding of the Interplay between Phytohormones and Photosynthesis under Environmental Stress

(2015) Mayank Gururani et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Differential expression of GS5 regulates grain size in rice

(2015) Chunjue Xu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Functions for rice RFL in vegetative axillary meristem specification and outgrowth

(2015) Gauravi M. Deshpande et al.   JOURNAL OF EXPERIMENTAL BOTANY

MONOCULM 3, an Ortholog of WUSCHEL in Rice, Is Required for Tiller Bud Formation

(2015) Zefu Lu et al.   Journal of Genetics and Genomics

Genetic Architecture of Natural Variation in Rice Chlorophyll Content Revealed by a Genome-Wide Association Study

(2015) Quanxiu Wang et al.   Molecular Plant

Copy number variation at the GL7 locus contributes to grain size diversity in rice

(2015) Yuexing Wang et al.   NATURE GENETICS

The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality

(2015) Shaokui Wang et al.   NATURE GENETICS

Genetic interactions between diverged alleles ofEarly heading date 1(Ehd1) andHeading date 3a(Hd3a)/ RICE FLOWERING LOCUS T1(RFT1) control differential heading and contribute to regional adaptation in rice (Oryza sativa)

(2015) Jing Zhao et al.   NEW PHYTOLOGIST

Axillary Meristem Formation in Rice Requires theWUSCHELOrthologTILLERS ABSENT1

(2015) Wakana Tanaka et al.   PLANT CELL

Plants in silico : why, why now and what?-an integrative platform for plant systems biology research

(2015) Xin-Guang Zhu et al.   PLANT CELL AND ENVIRONMENT

An evolutionarily conserved gene,FUWA, plays a role in determining panicle architecture, grain shape and grain weight in rice

(2015) Jun Chen et al.   PLANT JOURNAL

OsNAC2encoding a NAC transcription factor that affects plant height through mediating the gibberellic acid pathway in rice

(2015) Xu Chen et al.   PLANT JOURNAL

Regulation of OsmiR156h through Alternative Polyadenylation Improves Grain Yield in Rice

(2015) Meng Zhao et al.   PLoS One

Activation ofBig Grain1significantly improves grain size by regulating auxin transport in rice

(2015) Linchuan Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

FT-like proteins induce transposon silencing in the shoot apex during floral induction in rice

(2015) Shojiro Tamaki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sucrose Metabolism: Gateway to Diverse Carbon Use and Sugar Signaling

(2014) Yong-Ling Ruan   Annual Review of Plant Biology

LSCHL4 from Japonica Cultivar, Which Is Allelic to NAL1 , Increases Yield of Indica Super Rice 93-11

(2014) Guang-Heng Zhang et al.   Molecular Plant

DWARF3 Participates in an SCF Complex and Associates with DWARF14 to Suppress Rice Shoot Branching

(2014) Jinfeng Zhao et al.   PLANT AND CELL PHYSIOLOGY

Variations inCYP78A13coding region influence grain size and yield in rice

(2014) FAN XU et al.   PLANT CELL AND ENVIRONMENT

Days to heading 7, a major quantitative locus determining photoperiod sensitivity and regional adaptation in rice

(2014) He Gao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

OsNAP connects abscisic acid and leaf senescence by fine-tuning abscisic acid biosynthesis and directly targeting senescence-associated genes in rice

(2014) Chengzhen Liang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rare allele of a previously unidentified histone H4 acetyltransferase enhances grain weight, yield, and plant biomass in rice

(2014) Xian Jun Song et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulation of inflorescence architecture by cytokinins

(2014) Yingying Han et al.   Frontiers in Plant Science

Characterization and Fine Mapping of a Novel Rice Narrow Leaf Mutantnal9

(2013) Wei Li et al.   Journal of Integrative Plant Biology

Control of Rice Embryo Development, Shoot Apical Meristem Maintenance, and Grain Yield by a Novel Cytochrome P450

(2013) Weibing Yang et al.   Molecular Plant

DWARF 53 acts as a repressor of strigolactone signalling in rice

(2013) Liang Jiang et al.   NATURE

D14–SCFD3-dependent degradation of D53 regulates strigolactone signalling

(2013) Feng Zhou et al.   NATURE

Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield

(2013) Ken Ishimaru et al.   NATURE GENETICS

SWEET sugar transporters for phloem transport and pathogen nutrition

(2013) Li-Qing Chen   NEW PHYTOLOGIST

The ricenarrow leaf2andnarrow leaf3loci encode WUSCHEL-related homeobox 3A (OsWOX3A) and function in leaf, spikelet, tiller and lateral root development

(2013) Sung-Hwan Cho et al.   NEW PHYTOLOGIST

Rice monoculm mutation moc2, which inhibits outgrowth of the second tillers, is ascribed to lack of a fructose-1,6-bisphosphatase

(2013) Takemasa Koumoto et al.   Plant Biotechnology

Genome-Wide Binding Analysis of the Transcription Activator IDEAL PLANT ARCHITECTURE1 Reveals a Complex Network Regulating Rice Plant Architecture

(2013) Z. Lu et al.   PLANT CELL

SMALL GRAIN 1, which encodes a mitogen-activated protein kinase kinase 4, influences grain size in rice

(2013) Penggen Duan et al.   PLANT JOURNAL

Rice zinc finger protein DST enhances grain production through controlling Gn1a/OsCKX2 expression

(2013) S. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14

(2013) Siyi Guo et al.   Nature Communications

The U-Box E3 Ubiquitin Ligase TUD1 Functions with a Heterotrimeric G α Subunit to Regulate Brassinosteroid-Mediated Growth in Rice

(2013) Xingming Hu et al.   PLoS Genetics

Fine Mapping and Cloning of the Grain Number Per-Panicle Gene (Gnp4) on Chromosome 4 in Rice (Oryza sativa L.)

(2012) Zhan-ying ZHANG et al.   Agricultural Sciences in China

The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3

(2012) Peng Qi et al.   CELL RESEARCH

Progress in understanding and engineering primary plant metabolism

(2012) Mark Stitt   CURRENT OPINION IN BIOTECHNOLOGY

Glycine decarboxylase controls photosynthesis and plant growth

(2012) Stefan Timm et al.   FEBS LETTERS

Control of grain size, shape and quality by OsSPL16 in rice

(2012) Shaokui Wang et al.   NATURE GENETICS

e-photosynthesis: a comprehensive dynamic mechanistic model of C3 photosynthesis: from light capture to sucrose synthesis

(2012) XIN-GUANG ZHU et al.   PLANT CELL AND ENVIRONMENT

The Submergence Tolerance Gene SUB1A Delays Leaf Senescence under Prolonged Darkness through Hormonal Regulation in Rice

(2012) T. Fukao et al.   PLANT PHYSIOLOGY

The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight

(2012) Juan Li et al.   PLoS One

TAWAWA1, a regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition

(2012) A. Yoshida et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice

(2012) X. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetics and crop improvement

(2012) Nathan M. Springer   TRENDS IN GENETICS

Degradation of MONOCULM 1 by APC/CTAD1 regulates rice tillering

(2012) Cao Xu et al.   Nature Communications

Heading date 1 (Hd1), an ortholog of Arabidopsis CONSTANS, is a possible target of human selection during domestication to diversify flowering times of cultivated rice

(2011) Yasuyuki Takahashi et al.   GENES & GENETIC SYSTEMS

A Transgenic Study on Affecting Potato Tuber Yield by Expressing the Rice Sucrose Transporter Genes OsSUT5Z and OsSUT2MF

(2011) Aijun Sun et al.   Journal of Integrative Plant Biology

Overexpression of a Potato Sucrose Synthase Gene in Cotton Accelerates Leaf Expansion, Reduces Seed Abortion, and Enhances Fiber Production

(2011) Shou-Min Xu et al.   Molecular Plant

14-3-3 proteins act as intracellular receptors for rice Hd3a florigen

(2011) Ken-ichiro Taoka et al.   NATURE

Natural variation in GS5 plays an important role in regulating grain size and yield in rice

(2011) Yibo Li et al.   NATURE GENETICS

Flowering Time Genes Heading date 1 and Early heading date 1 Together Control Panicle Development in Rice

(2011) Naokuni Endo-Higashi et al.   PLANT AND CELL PHYSIOLOGY

Mutations in the F-box gene LARGER PANICLE improve the panicle architecture and enhance the grain yield in rice

(2011) Ming Li et al.   PLANT BIOTECHNOLOGY JOURNAL

LAX PANICLE2of Rice Encodes a Novel Nuclear Protein and Regulates the Formation of Axillary Meristems

(2011) Hiroaki Tabuchi et al.   PLANT CELL

ABERRANT PANICLE ORGANIZATION 2/RFL, the rice ortholog of Arabidopsis LEAFY, suppresses the transition from inflorescence meristem to floral meristem through interaction with APO1

(2011) Kyoko Ikeda-Kawakatsu et al.   PLANT JOURNAL

XIAO is involved in the control of organ size by contributing to the regulation of signaling and homeostasis of brassinosteroids and cell cycling in rice

(2011) Yunhe Jiang et al.   PLANT JOURNAL

SHORT GRAIN1 Decreases Organ Elongation and Brassinosteroid Response in Rice

(2011) H. Nakagawa et al.   PLANT PHYSIOLOGY

The Mechanistic Basis of Internal Conductance: A Theoretical Analysis of Mesophyll Cell Photosynthesis and CO2 Diffusion

(2011) D. Tholen et al.   PLANT PHYSIOLOGY

Sucrose Efflux Mediated by SWEET Proteins as a Key Step for Phloem Transport

(2011) L.-Q. Chen et al.   SCIENCE

Seed size is determined by the combinations of the genes controlling different seed characteristics in rice

(2011) Song Yan et al.   THEORETICAL AND APPLIED GENETICS

Fine mapping and candidate gene analysis of dense and erect panicle 3, DEP3, which confers high grain yield in rice (Oryza sativa L.)

(2011) Yongli Qiao et al.   THEORETICAL AND APPLIED GENETICS

Genetic and Molecular Bases of Rice Yield

(2010) Yongzhong Xing et al.   Annual Review of Plant Biology

Improving Photosynthetic Efficiency for Greater Yield

(2010) Xin-Guang Zhu et al.   Annual Review of Plant Biology

Rice DENSE AND ERECT PANICLE 2 is essential for determining panicle outgrowth and elongation

(2010) Feng Li et al.   CELL RESEARCH

Identification and functional analysis of the MOC1 interacting protein 1

(2010) Fengli Sun et al.   Journal of Genetics and Genomics

A Major QTL, Ghd8, Plays Pleiotropic Roles in Regulating Grain Productivity, Plant Height, and Heading Date in Rice

(2010) Wen-Hao Yan et al.   Molecular Plant

Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice

(2010) Yongqing Jiao et al.   NATURE GENETICS

A pair of floral regulators sets critical day length for Hd3a florigen expression in rice

(2010) Hironori Itoh et al.   NATURE GENETICS

FINE CULM1 (FC1) Works Downstream of Strigolactones to Inhibit the Outgrowth of Axillary Buds in Rice

(2010) Kosuke Minakuchi et al.   PLANT AND CELL PHYSIOLOGY

A Novel FactorFLOURY ENDOSPERM2Is Involved in Regulation of Rice Grain Size and Starch Quality

(2010) Kao-Chih She et al.   PLANT CELL

Identification and characterization of NARROW AND ROLLED LEAF 1, a novel gene regulating leaf morphology and plant architecture in rice

(2010) Jiang Hu et al.   PLANT MOLECULAR BIOLOGY

DTH8 Suppresses Flowering in Rice, Influencing Plant Height and Yield Potential Simultaneously

(2010) X. Wei et al.   PLANT PHYSIOLOGY

Isolation and characterization of a rice mutant with narrow and rolled leaves

(2010) Chao Wu et al.   PLANTA

Linking differential domain functions of the GS3 protein to natural variation of grain size in rice

(2010) H. Mao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New approach for rice improvement using a pleiotropic QTL gene for lodging resistance and yield

(2010) Taiichiro Ookawa et al.   Nature Communications

ERECT PANICLE2 Encodes a Novel Protein That Regulates Panicle Erectness in Indica Rice

(2009) K. Zhu et al.   GENETICS

Natural variation at the DEP1 locus enhances grain yield in rice

(2009) Xianzhong Huang et al.   NATURE GENETICS

PANICLE PHYTOMER2 (PAP2), encoding a SEPALLATA subfamily MADS-box protein, positively controls spikelet meristem identity in rice

(2009) Kaoru Kobayashi et al.   PLANT AND CELL PHYSIOLOGY

d14, a Strigolactone-Insensitive Mutant of Rice, Shows an Accelerated Outgrowth of Tillers

(2009) Tomotsugu Arite et al.   PLANT AND CELL PHYSIOLOGY

EngineeringOsBAK1gene as a molecular tool to improve rice architecture for high yield

(2009) Dan Li et al.   PLANT BIOTECHNOLOGY JOURNAL

Over-expression of the riceLRK1gene improves quantitative yield components

(2009) Xiaojun Zha et al.   PLANT BIOTECHNOLOGY JOURNAL

DWARF27, an Iron-Containing Protein Required for the Biosynthesis of Strigolactones, Regulates Rice Tiller Bud Outgrowth

(2009) H. Lin et al.   PLANT CELL

DWARF AND LOW-TILLERING, a new member of the GRAS family, plays positive roles in brassinosteroid signaling in rice

(2009) Hongning Tong et al.   PLANT JOURNAL

Short panicle1encodes a putative PTR family transporter and determines rice panicle size

(2009) Shengben Li et al.   PLANT JOURNAL

Dwarf 88, a novel putative esterase gene affecting architecture of rice plant

(2009) Zhenyu Gao et al.   PLANT MOLECULAR BIOLOGY

The Role of Tobacco Aquaporin1 in Improving Water Use Efficiency, Hydraulic Conductivity, and Yield Production Under Salt Stress

(2009) N. Sade et al.   PLANT PHYSIOLOGY

Identification and characterization of HTD2: a novel gene negatively regulating tiller bud outgrowth in rice

(2009) Wenzhen Liu et al.   PLANTA

Identification of up-regulated genes in flag leaves during rice grain filling and characterization of OsNAC5, a new ABA-dependent transcription factor

(2009) Raul A. Sperotto et al.   PLANTA

The Effect of the Crosstalk between Photoperiod and Temperature on the Heading-Date in Rice

(2009) Weijiang Luan et al.   PLoS One

Variations in Hd1 proteins, Hd3a promoters, and Ehd1 expression levels contribute to diversity of flowering time in cultivated rice

(2009) Y. Takahashi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Strigolactones are a new-defined class of plant hormones which inhibit shoot branching and mediate the interaction of plant-AM fungi and plant-parasitic weeds

(2009) CaiYan Chen et al.   Science in China. Series C, Life sciences / Chinese Academy of Sciences

Molecular Basis of Plant Architecture

(2008) Yonghong Wang et al.   Annual Review of Plant Biology

Quantitative Trait Loci (QTL) Analysis For Rice Grain Width and Fine Mapping of an Identified QTL Allele gw-5 in a Recombination Hotspot Region on Chromosome 5

(2008) X. Wan et al.   GENETICS

Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice

(2008) Weiya Xue et al.   NATURE GENETICS

Control of rice grain-filling and yield by a gene with a potential signature of domestication

(2008) Ertao Wang et al.   NATURE GENETICS

Over-expression ofSTP13, a hexose transporter, improves plant growth and nitrogen use inArabidopsis thalianaseedlings

(2008) R. A. SCHOFIELD et al.   PLANT CELL AND ENVIRONMENT

Mutation of the Rice Narrow leaf1 Gene, Which Encodes a Novel Protein, Affects Vein Patterning and Polar Auxin Transport

(2008) J. Qi et al.   PLANT PHYSIOLOGY

Distinct regulatory role for RFL, the rice LFY homolog, in determining flowering time and plant architecture

(2008) N. N. Rao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA