Protist Diversity and Seasonal Dynamics in Skagerrak Plankton Communities as Revealed by Metabarcoding and Microscopy

Bridging the gap between morphological species and molecular barcodes – Exemplified by loricate choanoflagellates

(2017) Nitsche Frank et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

Haptophyte Diversity and Vertical Distribution Explored by 18S and 28S Ribosomal RNA Gene Metabarcoding and Scanning Electron Microscopy

(2017) Sandra Gran-Stadniczeñko et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Mass mortality of marine birds in the Northeast Pacific caused by Akashiwo sanguinea

(2017) T Jones et al.   MARINE ECOLOGY PROGRESS SERIES

Revision of the Genus Micromonas Manton et Parke (Chlorophyta, Mamiellophyceae), of the Type Species M. pusilla (Butcher) Manton & Parke and of the Species M. commoda van Baren, Bachy and Worden and Description of Two New Species Based on the Genetic and Phenotypic Characterization of Cultured Isolates

(2017) Nathalie Simon et al.   PROTIST

Mass mortality of marine birds in the Northeast Pacific caused by Akashiwo sanguinea

(2017) T Jones et al.   MARINE ECOLOGY PROGRESS SERIES

Insights into global diatom distribution and diversity in the world’s ocean

(2016) Shruti Malviya et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Seasonal Occurrence of Loricate Choanoflagellates in Danish Inner Waters

(2016) Helge Abildhauge Thomsen et al.   PROTIST

Marked seasonality and high spatial variability of protist communities in shallow freshwater systems

(2015) Marianne Simon et al.   ISME Journal

Seasonal diversity and dynamics of haptophytes in the Skagerrak, Norway, explored by high-throughput sequencing

(2015) Elianne Sirnaes Egge et al.   MOLECULAR ECOLOGY

Eukaryotic plankton diversity in the sunlit ocean

(2015) C. de Vargas et al.   SCIENCE

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

MorphospeciesversusPhylospecies Concepts for Evaluating Phytoplankton Diversity: The Case of the Coccolithophores

(2014) Jeremy R. Young et al.   CRYPTOGAMIE ALGOLOGIE

Deep-branching Novel Lineages and High Diversity of Haptophytes in the Skagerrak (Norway) Uncovered by 454 Pyrosequencing

(2014) Elianne S. Egge et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Use of High Throughput Sequencing and Light Microscopy Show Contrasting Results in a Study of Phytoplankton Occurrence in a Freshwater Environment

(2014) Xi Xiao et al.   PLoS One

Seasonal dynamics of harmful algae in outer Oslofjorden monitored by microarray, qPCR, and microscopy

(2013) Simon M. Dittami et al.   ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH

Exploring the uncultured microeukaryote majority in the oceans: reevaluation of ribogroups within stramenopiles

(2013) Ramon Massana et al.   ISME Journal

454 Pyrosequencing to Describe Microbial Eukaryotic Community Composition, Diversity and Relative Abundance: A Test for Marine Haptophytes

(2013) Elianne Egge et al.   PLoS One

Comparative Analysis of Eukaryotic Marine Microbial Assemblages from 18S rRNA Gene and Gene Transcript Clone Libraries by Using Different Methods of Extraction

(2012) Amy Koid et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Distribution Patterns and Phylogeny of Marine Stramenopiles in the North Pacific Ocean

(2012) Yun-Chi Lin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Accuracy of protist diversity assessments: morphology compared with cloning and direct pyrosequencing of 18S rRNA genes and ITS regions using the conspicuous tintinnid ciliates as a case study

(2012) Charles Bachy et al.   ISME Journal

Diversity patterns and activity of uncultured marine heterotrophic flagellates unveiled with pyrosequencing

(2012) Ramiro Logares et al.   ISME Journal

The Protist Ribosomal Reference database (PR2): a catalog of unicellular eukaryote Small Sub-Unit rRNA sequences with curated taxonomy

(2012) Laure Guillou et al.   NUCLEIC ACIDS RESEARCH

Morphological and molecular characterization ofTeleaulax gracilissp. nov. andT. minutasp. nov. (Cryptophyceae)

(2012) Aitor Laza-Martínez et al.   PHYCOLOGIA

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

The plankton community in Norwegian coastal waters—abundance, composition, spatial distribution and diel variation

(2011) Gunnar Bratbak et al.   CONTINENTAL SHELF RESEARCH

The Western English Channel contains a persistent microbial seed bank

(2011) J Gregory Caporaso et al.   ISME Journal

Comparison of wintertime eukaryotic community from sea ice and open water in the Baltic Sea, based on sequencing of the 18S rRNA gene

(2011) Markus Majaneva et al.   POLAR BIOLOGY

Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood

(2011) Simon A. Berger et al.   SYSTEMATIC BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Sequence diversity and novelty of natural assemblages of picoeukaryotes from the Indian Ocean

(2010) Ramon Massana et al.   ISME Journal

Microbial community structure across the tree of life in the extreme Río Tinto

(2010) Linda A Amaral-Zettler et al.   ISME Journal

Seasonal to interannual variability and geographic distribution of the silicoflagellate fluxes in the Western Mediterranean

(2010) Andrés S. Rigual-Hernández et al.   MARINE MICROPALEONTOLOGY

Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water

(2010) THORSTEN STOECK et al.   MOLECULAR ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Defining DNA-Based Operational Taxonomic Units for Microbial-Eukaryote Ecology

(2009) D. A. Caron et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

New Insights into the Diversity of Marine Picoeukaryotes

(2009) Fabrice Not et al.   PLoS One

Diversity and evolution of marine phytoplankton

(2008) Nathalie Simon et al.   COMPTES RENDUS BIOLOGIES

Widespread occurrence and genetic diversity of marine parasitoids belonging toSyndiniales(Alveolata)

(2008) L. Guillou et al.   ENVIRONMENTAL MICROBIOLOGY

Genetic variation in bloom-forming ichthyotoxicPseudochattonellaspecies (Dictyochophyceae, Heterokonta) using nuclear, mitochondrial and plastid DNA sequence data

(2008) Ingvild Riisberg et al.   EUROPEAN JOURNAL OF PHYCOLOGY