The soil organic matter decomposition mechanisms in ectomycorrhizal fungi are tuned for liberating soil organic nitrogen

Fenton reaction facilitates organic nitrogen acquisition by an ectomycorrhizal fungus

(2018) Michiel Op De Beeck et al.   NEW PHYTOLOGIST

The ectomycorrhizal basidiomycete Laccaria bicolor releases a secreted β-1,4 endoglucanase that plays a key role in symbiosis development

(2018) Feng Zhang et al.   NEW PHYTOLOGIST

Ectomycorrhizal fungi and the enzymatic liberation of nitrogen from soil organic matter: why evolutionary history matters

(2017) Peter T. Pellitier et al.   NEW PHYTOLOGIST

Ectomycorrhizal fungi slow soil carbon cycling

(2016) Colin Averill et al.   ECOLOGY LETTERS

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

Localizing gene regulation reveals a staggered wood decay mechanism for the brown rot fungusPostia placenta

(2016) Jiwei Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stimulation of soil organic nitrogen pool: The effect of plant and soil organic matter degrading enzymes

(2016) Antti-Jussi Kieloaho et al.   SOIL BIOLOGY & BIOCHEMISTRY

Involutin Is an Fe3+Reductant Secreted by the Ectomycorrhizal Fungus Paxillus involutus during Fenton-Based Decomposition of Organic Matter

(2015) Firoz Shah et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

FunPat: function-based pattern analysis on RNA-seq time series data

(2015) Tiziana Sanavia et al.   BMC GENOMICS

Three Redundant Synthetases Secure Redox-Active Pigment Production in the Basidiomycete Paxillus involutus

(2015) Jana Braesel et al.   CHEMISTRY & BIOLOGY

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

(2015) Annegret Kohler et al.   NATURE GENETICS

Vibrational spectroscopic image analysis of biological material using multivariate curve resolution–alternating least squares (MCR-ALS)

(2015) Judith Felten et al.   Nature Protocols

Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors

(2015) Firoz Shah et al.   NEW PHYTOLOGIST

Revisiting the ‘Gadgil effect’: do interguild fungal interactions control carbon cycling in forest soils?

(2015) Christopher W. Fernandez et al.   NEW PHYTOLOGIST

antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters

(2015) Tilmann Weber et al.   NUCLEIC ACIDS RESEARCH

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Genomic and transcriptomic analysis of Laccaria bicolor CAZome reveals insights into polysaccharides remodelling during symbiosis establishment

(2014) Claire Veneault-Fourrey et al.   FUNGAL GENETICS AND BIOLOGY

EctomycorrhizalCortinariusspecies participate in enzymatic oxidation of humus in northern forest ecosystems

(2014) Inga T. M. Bödeker et al.   NEW PHYTOLOGIST

Ectomycorrhizal fungi - potential organic matter decomposers, yet not saprotrophs

(2014) Björn D. Lindahl et al.   NEW PHYTOLOGIST

Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

(2013) Anthony Levasseur et al.   Biotechnology for Biofuels

Ectomycorrhizal fungi contribute to soil organic matter cycling in sub-boreal forests

(2013) Lori A Phillips et al.   ISME Journal

Carbon availability triggers the decomposition of plant litter and assimilation of nitrogen by an ectomycorrhizal fungus

(2013) F Rineau et al.   ISME Journal

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The molecular components of the extracellular protein-degradation pathways of the ectomycorrhizal fungusPaxillus involutus

(2013) Firoz Shah et al.   NEW PHYTOLOGIST

MycoCosm portal: gearing up for 1000 fungal genomes

(2013) Igor V. Grigoriev et al.   NUCLEIC ACIDS RESEARCH

The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown-rot mechanism involving Fenton chemistry

(2012) Francois Rineau et al.   ENVIRONMENTAL MICROBIOLOGY

Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche

(2012) E. Morin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

(2011) Marcus Lechner et al.   BMC BIOINFORMATICS

GC-Content Normalization for RNA-Seq Data

(2011) Davide Risso et al.   BMC BIOINFORMATICS

New and classic families of secreted fungal heme peroxidases

(2010) Martin Hofrichter et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Temporal and functional pattern of secreted enzyme activities in an ectomycorrhizal community

(2010) Pierre-Emmanuel Courty et al.   SOIL BIOLOGY & BIOCHEMISTRY

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Ectomycorrhizal fungi and their enzymes in soils: is there enough evidence for their role as facultative soil saprotrophs?

(2009) Petr Baldrian   OECOLOGIA

Characterization and regulation of PiDur3, a permease involved in the acquisition of urea by the ectomycorrhizal fungus Paxillus involutus

(2008) Mélanie Morel et al.   FUNGAL GENETICS AND BIOLOGY

The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis

(2008) F. Martin et al.   NATURE

The sugar porter gene family ofLaccaria bicolor: function in ectomycorrhizal symbiosis and soil-growing hyphae

(2008) Mónica Fajardo López et al.   NEW PHYTOLOGIST

A gene repertoire for nitrogen transporters inLaccaria bicolor

(2008) Eva Lucic et al.   NEW PHYTOLOGIST

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH