Reticulate evolution within a spruce ( Picea ) species complex revealed by population genomic analysis

Adaptive introgression: a plant perspective

(2018) Adriana Suarez-Gonzalez et al.   Biology Letters

Scale and direction of adaptive introgression between black cottonwood (Populus trichocarpa ) and balsam poplar (P. balsamifera )

(2018) Adriana Suarez-Gonzalez et al.   MOLECULAR ECOLOGY

Contrasting Rates of Molecular Evolution and Patterns of Selection among Gymnosperms and Flowering Plants

(2017) Amanda R. De La Torre et al.   MOLECULAR BIOLOGY AND EVOLUTION

Extensive recent secondary contacts between four European white oak species

(2017) Thibault Leroy et al.   NEW PHYTOLOGIST

Watching speciation in action

(2017) B. Rosemary Grant et al.   SCIENCE

Adaptive Genetic Exchange: A Tangled History of Admixture and Evolutionary Innovation

(2017) Michael L. Arnold et al.   TRENDS IN ECOLOGY & EVOLUTION

Molecular Evolution of Grass Stomata

(2017) Zhong-Hua Chen et al.   TRENDS IN PLANT SCIENCE

Plant speciation across environmental gradients and the occurrence and nature of hybrid zones

(2017) Richard J. Abbott   Journal of Systematics and Evolution

Gene flow and diversification in a species complex ofAlcantareainselberg bromeliads

(2016) Christian Lexer et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Inferring the Frequency Spectrum of Derived Variants to Quantify Adaptive Molecular Evolution in Protein-Coding Genes of Drosophila melanogaster

(2016) Peter D. Keightley et al.   GENETICS

Genomic evidence for polyphyletic origins and interlineage gene flow within complex taxa: a case study ofPicea brachytylain the Qinghai-Tibet Plateau

(2016) Dafu Ru et al.   MOLECULAR ECOLOGY

A genomic perspective on hybridization and speciation

(2016) Bret A. Payseur et al.   MOLECULAR ECOLOGY

Genomics of hybridization and its evolutionary consequences

(2016) Richard J. Abbott et al.   MOLECULAR ECOLOGY

Anderson's and Stebbins' Prophecy Comes True: Genetic Exchange in Fluctuating Environments

(2016) Michael L. Arnold   SYSTEMATIC BOTANY

Phylogenomics Reveals Three Sources of Adaptive Variation during a Rapid Radiation

(2016) James B. Pease et al.   PLOS BIOLOGY

Inferring the Frequency Spectrum of Derived Variants to Quantify Adaptive Molecular Evolution in Protein-Coding Genes of Drosophila melanogaster

(2016) Peter D. Keightley et al.   GENETICS

Mitochondrial introgression and complex biogeographic history of the genus Picea

(2015) Jin-Hua Ran et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Plio-Pleistocene climate sensitivity evaluated using high-resolution CO2 records

(2015) M. A. Martínez-Botí et al.   NATURE

Evolution of Darwin’s finches and their beaks revealed by genome sequencing

(2015) Sangeet Lamichhaney et al.   NATURE

FLOR-ID: an interactive database of flowering-time gene networks inArabidopsis thaliana

(2015) Frédéric Bouché et al.   NUCLEIC ACIDS RESEARCH

Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies)

(2015) Nicolas Delhomme et al.   PLoS One

Distributional dynamics and interspecific gene flow inPicea likiangensisandP. wilsoniitriggered by climate change on the Qinghai-Tibet Plateau

(2014) Yongshuai Sun et al.   JOURNAL OF BIOGEOGRAPHY

PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses in R

(2014) Bastian Pfeifer et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evaluating the Use of ABBA–BABA Statistics to Locate Introgressed Loci

(2014) Simon H. Martin et al.   MOLECULAR BIOLOGY AND EVOLUTION

Pliocene intraspecific divergence and Plio-Pleistocene range expansions withinPicea likiangensis(Lijiang spruce), a dominant forest tree of the Qinghai-Tibet Plateau

(2014) Long Li et al.   MOLECULAR ECOLOGY

Multiple ITS Copies Reveal Extensive Hybridization within Rheum (Polygonaceae), a Genus That Has Undergone Rapid Radiation

(2014) Dongshi Wan et al.   PLoS One

Tectonic control of Yarlung Tsangpo Gorge revealed by a buried canyon in Southern Tibet

(2014) P. Wang et al.   SCIENCE

The Inference of Gene Trees with Species Trees

(2014) Gergely J. Szöllősi et al.   SYSTEMATIC BIOLOGY

Outward-growth of the Tibetan Plateau during the Cenozoic: A review

(2014) Chengshan Wang et al.   TECTONOPHYSICS

Hybridization and speciation

(2013) R. Abbott et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

A road map for molecular ecology

(2013) Rose L. Andrew et al.   MOLECULAR ECOLOGY

A new phylogeny for the genus Picea from plastid, mitochondrial, and nuclear sequences

(2013) Jared D. Lockwood et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Reference-Free Population Genomics from Next-Generation Transcriptome Data and the Vertebrate–Invertebrate Gap

(2013) Philippe Gayral et al.   PLoS Genetics

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

Two-phase growth of high topography in eastern Tibet during the Cenozoic

(2012) E. Wang et al.   Nature Geoscience

Evolution of Ocean Temperature and Ice Volume Through the Mid-Pleistocene Climate Transition

(2012) H. Elderfield et al.   SCIENCE

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Enhancements to the ADMIXTURE algorithm for individual ancestry estimation

(2011) David H Alexander et al.   BMC BIOINFORMATICS

Synthetic spike-in standards for RNA-seq experiments

(2011) L. Jiang et al.   GENOME RESEARCH

Testing for Ancient Admixture between Closely Related Populations

(2011) Eric Y. Durand et al.   MOLECULAR BIOLOGY AND EVOLUTION

A New Test for Detecting Recent Positive Selection that is Free from the Confounding Impacts of Demography

(2010) H. Li   MOLECULAR BIOLOGY AND EVOLUTION

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Demographic histories of four spruce (Picea) species of the Qinghai-Tibetan Plateau and neighboring areas inferred from multiple nuclear loci

(2009) Yuan Li et al.   MOLECULAR BIOLOGY AND EVOLUTION

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Evidence that strong positive selection drives neofunctionalization in the tandemly duplicated polyhomeotic genes in Drosophila

(2008) S. Beisswanger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA