Molecular bases for the constitutive photomorphogenic phenotypes in Arabidopsis

KELCH F-BOX protein positively influences Arabidopsis seed germination by targeting PHYTOCHROME-INTERACTING FACTOR1

(2018) Manoj Majee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dynamic regulation of PIF5 by COP1-SPA complex to optimize photomorphogenesis in Arabidopsis

(2018) Vinh Ngoc Pham et al.   PLANT JOURNAL

Expanding Roles of PIFs in Signal Integration from Multiple Processes

(2017) Inyup Paik et al.   Molecular Plant

PHYTOCHROME INTERACTING FACTORS mediate metabolic control of the circadian system in Arabidopsis

(2017) Ekaterina Shor et al.   NEW PHYTOLOGIST

Seedling Establishment: A Dimmer Switch-Regulated Process between Dark and Light Signaling

(2017) Charlotte M. M. Gommers et al.   PLANT PHYSIOLOGY

Phytochromes and Phytochrome Interacting Factors

(2017) Vinh Ngoc Pham et al.   PLANT PHYSIOLOGY

Noncanonical role ofArabidopsisCOP1/SPA complex in repressing BIN2-mediated PIF3 phosphorylation and degradation in darkness

(2017) Jun-Jie Ling et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PPKs mediate direct signal transfer from phytochrome photoreceptors to transcription factor PIF3

(2017) Weimin Ni et al.   Nature Communications

BLADE-ON-PETIOLE proteins act in an E3 ubiquitin ligase complex to regulate PHYTOCHROME INTERACTING FACTOR 4 abundance

(2017) Bo Zhang et al.   eLife

Complex heatmaps reveal patterns and correlations in multidimensional genomic data

(2016) Zuguang Gu et al.   BIOINFORMATICS

A negative feedback loop between PHYTOCHROME INTERACTING FACTORs and HECATE proteins fine tunes photomorphogenesis in Arabidopsis

(2016) Ling Zhu et al.   PLANT CELL

Ultraviolet-B radiation stimulates downward leaf curling in Arabidopsis thaliana

(2015) Ana Carolina Fierro et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

ArabidopsisDET1 degrades HFR1 but stabilizes PIF1 to precisely regulate seed germination

(2015) Hui Shi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Illuminating Progress in Phytochrome-Mediated Light Signaling Pathways

(2015) Xiaosa Xu et al.   TRENDS IN PLANT SCIENCE

CUL4 forms an E3 ligase with COP1 and SPA to promote light-induced degradation of PIF1

(2015) Ling Zhu et al.   Nature Communications

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

BR-dependent phosphorylation modulates PIF4 transcriptional activity and shapes diurnal hypocotyl growth

(2014) Stella Bernardo-García et al.   GENES & DEVELOPMENT

Combinatorial Complexity in a Transcriptionally Centered Signaling Hub in Arabidopsis

(2014) Anne Pfeiffer et al.   Molecular Plant

Suicidal Co-Degradation of the Phytochrome Interacting Factor 3 and Phytochrome B in Response to Light

(2014) Ling Zhu et al.   Molecular Plant

Arabidopsis DE-ETIOLATED1 Represses Photomorphogenesis by Positively Regulating Phytochrome-Interacting Factors in the Dark

(2014) J. Dong et al.   PLANT CELL

PHYTOCHROME INTERACTING FACTOR1 Enhances the E3 Ligase Activity of CONSTITUTIVE PHOTOMORPHOGENIC1 to Synergistically Repress Photomorphogenesis in Arabidopsis

(2014) X. Xu et al.   PLANT CELL

A mutually assured destruction mechanism attenuates light signaling in Arabidopsis

(2014) W. Ni et al.   SCIENCE

Phytochrome-interacting transcription factors PIF4 and PIF5 induce leaf senescence in Arabidopsis

(2014) Yasuhito Sakuraba et al.   Nature Communications

HFR1 Sequesters PIF1 to Govern the Transcriptional Network Underlying Light-Initiated Seed Germination in Arabidopsis

(2013) H. Shi et al.   PLANT CELL

Conversion from CUL4-based COP1-SPA E3 apparatus to UVR8-COP1-SPA complexes underlies a distinct biochemical function of COP1 under UV-B

(2013) X. Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Quartet of PIF bHLH Factors Provides a Transcriptionally Centered Signaling Hub That Regulates Seedling Morphogenesis through Differential Expression-Patterning of Shared Target Genes in Arabidopsis

(2013) Yu Zhang et al.   PLoS Genetics

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

The photomorphogenic repressors COP1 and DET1: 20 years later

(2012) On Sun Lau et al.   TRENDS IN PLANT SCIENCE

Phosphorylation by CK2 Enhances the Rapid Light-induced Degradation of Phytochrome Interacting Factor 1 inArabidopsis

(2011) Qingyun Bu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Arabidopsis CULLIN4-Damaged DNA Binding Protein 1 Interacts with CONSTITUTIVELY PHOTOMORPHOGENIC1-SUPPRESSOR OF PHYA Complexes to Regulate Photomorphogenesis and Flowering Time

(2010) H. Chen et al.   PLANT CELL

Direct regulation of phytoene synthase gene expression and carotenoid biosynthesis by phytochrome-interacting factors

(2010) G. Toledo-Ortiz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PIFs: pivotal components in a cellular signaling hub

(2010) Pablo Leivar et al.   TRENDS IN PLANT SCIENCE

Inhibition of the shade avoidance response by formation of non-DNA binding bHLH heterodimers

(2009) Patricia Hornitschek et al.   EMBO JOURNAL

Blue Light Induces Degradation of the Negative Regulator Phytochrome Interacting Factor 1 to Promote Photomorphogenic Development of Arabidopsis Seedlings

(2009) A. Castillon et al.   GENETICS

Phytochromes promote seedling light responses by inhibiting four negatively-acting phytochrome-interacting factors

(2009) J. Shin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PIF3 is a repressor of chloroplast development

(2009) P. G. Stephenson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multiple Phytochrome-Interacting bHLH Transcription Factors Repress Premature Seedling Photomorphogenesis in Darkness

(2008) Pablo Leivar et al.   CURRENT BIOLOGY

Light-Induced Phosphorylation and Degradation of the Negative Regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis Depend upon Its Direct Physical Interactions with Photoactivated Phytochromes

(2008) H. Shen et al.   PLANT CELL

PIF1 directly and indirectly regulates chlorophyll biosynthesis to optimize the greening process in Arabidopsis

(2008) J. Moon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA