Application of microsatellite genotyping by sequencing (SSR-GBS) to measure genetic diversity of the East African Oreochromis niloticus

Anthropogenic impacts on the contextual morphological diversification and adaptation of Nile tilapia (Oreochromis niloticus, L. 1758) in East Africa

(2018) Papius Dias Tibihika et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Identifying the minimum number of microsatellite loci needed to assess population genetic structure: A case study in fly culturing

(2017) Wolfgang Arthofer et al.   FLY

Simple sequence repeats (SSRs) markers in fish genomic research and their acceleration via next-generation sequencing and computational approaches

(2016) Jitendra Kumar Sundaray et al.   AQUACULTURE INTERNATIONAL

megasat: automated inference of microsatellite genotypes from sequence data

(2016) Luyao Zhan et al.   Molecular Ecology Resources

High-throughput microsatellite genotyping in ecology: improved accuracy, efficiency, standardization and success with low-quantity and degraded DNA

(2016) M. De Barba et al.   Molecular Ecology Resources

A novel method of microsatellite genotyping-by-sequencing using individual combinatorial barcoding

(2016) Salla Vartia et al.   Royal Society Open Science

A profile of the introduced Oreochromis niloticus (Pisces: Teleostei) populations in Lake Victoria Region in relation to its putative origin of Lakes Edward and Albert (Uganda - E. Africa) based on random amplified polymorphic DNA analysis

(2016) W Mwanja Wilson et al.   AFRICAN JOURNAL OF BIOTECHNOLOGY

Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

(2015) Naama M. Kopelman et al.   Molecular Ecology Resources

Correction: Rapid Microsatellite Identification from Illumina Paired-End Genomic Sequencing in Two Birds and a Snake

(2015) Todd A. Castoe et al.   PLoS One

Multiplexing with three-primer PCR for rapid and economical microsatellite validation

(2014) Salla Vartia et al.   HEREDITAS

Topoisomerase II mediates meiotic crossover interference

(2014) Liangran Zhang et al.   NATURE

Evaluation of microsatellites of Catha edulis (qat; Celastraceae) identified using pyrosequencing

(2013) Manuel A. Curto et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

A Review of Microsatellite Markers and Their Applications in Rice Breeding Programs to Improve Blast Disease Resistance

(2013) Gous Miah et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Lessons learned from microsatellite development for nonmodel organisms using 454 pyrosequencing

(2013) C. N. Schoebel et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

SSR_pipeline: A Bioinformatic Infrastructure for Identifying Microsatellites From Paired-End Illumina High-Throughput DNA Sequencing Data

(2013) Mark P. Miller et al.   JOURNAL OF HEREDITY

An overview of STRUCTURE: applications, parameter settings, and supporting software

(2013) Liliana Porras-Hurtado et al.   Frontiers in Genetics

PICcalc: An Online Program to Calculate Polymorphic Information Content for Molecular Genetic Studies

(2012) Sándor Nagy et al.   BIOCHEMICAL GENETICS

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Current trends in microsatellite genotyping

(2011) E. GUICHOUX et al.   Molecular Ecology Resources

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

Inferring weak population structure with the assistance of sample group information

(2009) MELISSA J. HUBISZ et al.   Molecular Ecology Resources

Next-generation DNA sequencing

(2008) Jay Shendure et al.   NATURE BIOTECHNOLOGY

genepop’007: a complete re-implementation of the genepop software for Windows and Linux

(2007) FRANÇOIS ROUSSET   Molecular Ecology Resources