4.5 Article

Epithelial-to-mesenchymal transition status of primary breast carcinomas and its correlation with metastatic behavior

Journal

BREAST CANCER RESEARCH AND TREATMENT
Volume 174, Issue 3, Pages 649-659

Publisher

SPRINGER
DOI: 10.1007/s10549-018-05089-5

Keywords

Breast carcinoma; Chemoresistance; Chemotherapy response

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Funding

  1. Center for Translational Molecular Medicine (BreastCARE)

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BackgroundEpithelial-to-mesenchymal transition (EMT) has been implicated as an important step in the development of distant metastases. We therefore wished to study EMT status of primary breast carcinomas from patients who during follow-up developed distant metastases.MethodsmRNA expression profiles of primary breast carcinoma samples (n=151) from patients who developed metastatic disease were analyzed and EMT status was designated using a previously described EMT-core signature. EMT status of the primary tumor was correlated to clinicopathological characteristics, molecular subtypes, metastasis pattern, chemotherapy response and survival outcomes. In addition, using immunohistochemistry, the expression levels of several proteins implicated in EMT were studied (CDH1, CDH2, NAT1, SNAI2, TWIST1, VIM, and ZEB1) compared with the designated EMT status and survival.ResultsUtilizing the 130-gene-EMT-core signature, 66.2% of the primary tumors in the current study was assessed as EMT-activated. In contrast to our expectations, analyses revealed that 84.6% of Luminal A tumors, 65.1% of Luminal B tumors, and 55.6% of HER2-like had an activated EMT status, compared to only 25% of the basal-type tumors (p<0.001). EMT status was not correlated to the pattern of metastatic disease, metastasis-specific survival, and overall survival. Similarly, there was not a significant association between EMT status of the primary tumor and chemotherapy response in the metastatic setting. Immunostaining for NAT1 and TWIST1 correlated with the EMT status (p 0.003 and p 0.047, respectively). Multivariate analyses showed that NAT1 and TWIST1 staining was significantly associated with EMT status regardless of the estrogen receptor status of the tumors (p values: 0.020 and 0.027, respectively).ConclusionsThe EMT status of breast cancers, as defined by the presence of a core EMT gene expression signature is associated with non-basal-type tumors, but not with the pattern of distant metastasis. Of several potential immunohistochemical EMT markers, only NAT1 and TWIST1 expression levels were associated with the gene expression-based EMT status.

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Baylin, Christopher Benz, Andrew Berchuck, Mario Berrios, Darell Bigner, Michael Birrer, Tom Bodenheimer, Lori Boice, Moiz S. Bootwalla, Marcus Bosenberg, Reanne Bowlby, Jeffrey Boyd, Russell R. Broaddus, Malcolm Brock, Denise Brooks, Susan Bullman, Samantha J. Caesar-Johnson, Thomas E. Carey, Rebecca Carlsen, Robert Cerfolio, Vishal S. Chandan, Hsiao-Wei Chen, Andrew D. Cherniack, Jeremy Chien, Juok Cho, Eric Chuah, Carrie Cibulskis, Leslie Cope, Matthew G. Cordes, Erin Curley, Bogdan Czerniak, Ludmila Danilova, Ian J. Davis, Timothy Defreitas, John A. Demchok, Noreen Dhalla, Rajiv Dhir, HarshaVardhan Doddapaneni, Adel El-Naggar, Ina Felau, Martin L. Ferguson, Gaetano Finocchiaro, Kwun M. Fong, Scott Frazer, William Friedman, Catrina C. Fronick, Lucinda A. Fulton, Stacey B. Gabriel, Jianjiong Gao, Nils Gehlenborg, Jeffrey E. Gershenwald, Ronald Ghossein, Nasra H. Giama, Richard A. Gibbs, Carmen Gomez, Ramaswamy Govindan, D. Neil Hayes, Apurva M. Hegde, David Heiman, Zachary Heins, Austin J. Hepperla, Andrea Holbrook, Robert A. Holt, Alan P. Hoyle, Ralph H. Hruban, Jianhong Hu, Mei Huang, David Huntsman, Jason Huse, Christine A. Iacobuzio Donahue, Michael Ittmann, Joy C. Jayaseelan, Stuart R. Jefferys, Corbin D. Jones, Steven J. M. Jones, Hartmut Juhl, Koo Jeong Kang, Beth Karlan, Katayoon Kasaian, Electron Kebebew, Hark Kyun Kim, Viktoriya Korchina, Ritika Kundra, Phillip H. Lai, Eric Lander, Xuan Le, Darlene Lee, Douglas A. Levine, Lora Lewis, Tim Ley, Haiyan Irene Li, Pei Lin, W. M. Linehan, Fei Fei Liu, Yiling Lu, Lisa Lype, Yussanne Ma, Dennis T. Maglinte, Elaine R. Mardis, Jeffrey Marks, Marco A. Marra, Thomas J. Matthew, Michael Mayo, Karen McCune, Samuel R. Meier, Shaowu Meng, Piotr A. Mieczkowski, Tom Mikkelsen, Christopher A. Miller, Gordon B. Mills, Richard A. Moore, Carl Morrison, Lisle E. Mose, Catherine D. Moser, Andrew J. Mungall, Karen Mungall, David Mutch, Donna M. Muzny, Jerome Myers, Yulia Newton, Michael S. Noble, Peter O'Donnell, Brian Patrick O'Neill, Angelica Ochoa, Joong-Won Park, Joel S. Parker, Harvey Pass, Alessandro Pastore, Nathan A. Pennell, Charles M. Perou, Nicholas Petrelli, Olga Potapova, Janet S. Rader, Suresh Ramalingam, W. Kimryn Rathmell, Victor Reuter, Sheila M. Reynolds, Matthew Ringel, Jeffrey Roach, Lewis R. Roberts, A. Gordon Robertson, Sara Sadeghi, Charles Saller, Francisco Sanchez-Vega, Dirk Schadendorf, Jacqueline E. Schein, Heather K. Schmidt, Nikolaus Schultz, Raja Seethala, Yasin Senbabaoglu, Troy Shelton, Yan Shi, Juliann Shih, Ilya Shmulevich, Craig Shriver, Sabina Signoretti, Janae Simons, Samuel Singer, Payal Sipahimalani, Tara J. Skelly, Karen Smith McCune, Nicholas D. Socci, Matthew G. Soloway, Anil K. Sood, Angela Tam, Donghui Tan, Roy Tarnuzzer, Nina Thiessen, R. Houston Thompson, Leigh B. Thorne, Ming Tsao, Christopher Umbricht, David J. Van Den Berg, Erwin G. Van Meir, Umadevi Veluvolu, Douglas Voet, Linghua Wang, Paul Weinberger, Daniel J. Weisenberger, Dennis Wigle, Matthew D. Wilkerson, Richard K. Wilson, Boris Winterhoff, Maciej Wiznerowicz, Tina Wong, Winghing Wong, Liu Xi, Christina Yau, Hailei Zhang, Hongxin Zhang, Jiashan Zhang

NATURE (2020)

Article Multidisciplinary Sciences

Unsupervised class discovery in pancreatic ductal adenocarcinoma reveals cell-intrinsic mesenchymal features and high concordance between existing classification systems

Frederike Dijk, Veronique L. Veenstra, Eline C. Soer, Mark P. G. Dings, Lan Zhao, Johannes B. Halfwerk, Gerrit K. Hooijer, Helene Damhofer, Marco Marzano, Anne Steins, Cynthia Waasdorp, Olivier R. Busch, Marc G. Besselink, Johanna A. Tol, Lieke Welling, Lennart B. van Rijssen, Sjors Klompmaker, Hanneke W. Wilmink, Hanneke W. van Laarhoven, Jan Paul Medema, Louis Vermeulen, Sander R. van Hooff, Jan Koster, Joanne Verheij, Marc J. van de Vijver, Xin Wang, Maarten F. Bijlsma

SCIENTIFIC REPORTS (2020)

Review Pathology

Performance of gastrointestinal pathologists within a national digital review panel for Barrett's oesophagus in the Netherlands: results of 80 prospective biopsy reviews

Esther Klaver, Myrtle Van der Wel, Lucas Duits, Roos Pouw, Kees Seldenrijk, Johan Offerhaus, Mike Visser, Fiebo ten Kate, Katharina Biermann, Lodewijk Brosens, Michael Doukas, Clement Huysentruyt, Arend Karrenbeld, Gursah Kats-Ugurlu, Jaap Van der Laan, Ineke van Lijnschoten, Freek Moll, Ariadne Ooms, Jan Tijssen, Sybren Meijer, Jacques Bergman

Summary: This study evaluated the performance of pathologists from Dutch BO expert centres in 80 consecutive LGD reviews, determining their eligibility for an expert panel through independent assessment of digital slides. After group discussions and a second phase of evaluation, remaining aspirant panel members were confirmed to meet the criteria.

JOURNAL OF CLINICAL PATHOLOGY (2021)

Article Biochemistry & Molecular Biology

Epithelium-derived Indian Hedgehog restricts stromal expression of ErbB family members that drive colonic tumor cell proliferation

Florien Westendorp, Olga N. Karpus, Pim J. Koelink, Jacqueline L. M. Vermeulen, Sander Meisner, Jan Koster, Nike V. J. A. Buller, Manon E. Wildenberg, Vanesa Muncan, Gijs R. van den Brink

Summary: The loss of Indian Hedgehog signaling may enhance colonic adenomagenesis and promote the development of colorectal cancer by upregulating ErbB pathway family members in colonic stromal cells. Indian Hedgehog plays a critical role as a stromal tumor suppressor in the intestine by regulating epithelial proliferation.

ONCOGENE (2021)

Article Oncology

Specific and Sensitive Detection of Neuroblastoma mRNA Markers by Multiplex RT-qPCR

Lieke M. J. van Zogchel, Lily Zappeij-Kannegieter, Ahmad Javadi, Marjolein Lugtigheid, Nina U. Gelineau, Nathalie S. M. Lak, Danny A. Zwijnenburg, Jan Koster, Janine Stutterheim, C. Ellen van der Schoot, Godelieve A. M. Tytgat

Summary: RT-qPCR is a sensitive technique to detect minimal residual disease in neuroblastoma patients, with a panel of multiple mRNA markers increasing sensitivity. Two distinct phenotypes in neuroblastoma can be identified by different mRNA markers, and a multiplex RT-qPCR has been developed to test seven mRNA markers while reducing sample volume. This approach shows comparable sensitivity to single marker RT-qPCR, saving time and resources and facilitating clinical introduction.

CANCERS (2021)

Review Oncology

Target Actionability Review: a systematic evaluation of replication stress as a therapeutic target for paediatric solid malignancies

Kaylee M. Keller, Sonja Krausert, Apurva Gopisetty, Dan Luedtke, Jan Koster, Nil A. Schubert, Ana Rodriguez, Sander R. van Hooff, Damian Stichel, M. Emmy M. Dolman, Gilles Vassal, Stefan M. Pfister, Hubert N. Caron, Louis F. Stancato, Jan J. Molenaar, Natalie Jaeger, Marcel Kool

Summary: This study systematically reviewed the targeting of replication stress in pediatric tumors with a focus on DNA repair pathways and cell cycle checkpoint control. Various targets in these pathways have been studied in different diseases, with ATR, CHK1, PARP or WEE1 being the most promising targets in neuroblastoma, osteosarcoma, high-grade glioma or medulloblastoma.

EUROPEAN JOURNAL OF CANCER (2022)

Article Pathology

Interobserver agreement of a gastric adenocarcinoma tumor regression grading system that incorporates assessment of lymph nodes

Andrianos Tsekrekos, Michael Vieth, Nelson Ndegwa, Adrian Bateman, Jean-Francois Flejou, Heike Grabsch, Luca Mastracci, Sybren L. Meijer, Luca Saragoni, Kieran Sheahan, Jayant Shetye, Rhonda Yantiss, Lars Lundell, Sonke Detlefsen

Summary: Perioperative chemotherapy combined with surgery for locally advanced gastric cancer is increasing, with Histologic tumor regression grade (TRG) identified as an important prognostic factor. The study found that the combination of the Becker TRG system with a three-tiered grading of regression in LNs is reproducible and may add value to prognostic assessment in gastric cancer specimens.

HUMAN PATHOLOGY (2021)

Article Infectious Diseases

Altered Gut Structure and Anti-Bacterial Defense in Adult Mice Treated with Antibiotics during Early Life

Tania Martins Garcia, Manon van Roest, Jacqueline L. M. Vermeulen, Sander Meisner, Jan Koster, Manon E. Wildenberg, Ruurd M. van Elburg, Vanesa Muncan, Ingrid B. Renes

Summary: This study investigated whether the effects of early life antibiotic use on the gut persist into adulthood and whether there are long-term consequences for gut functioning. The results showed that the majority of the antibiotic-induced gut effects did not persist into adulthood, but early life antibiotic use did impact later life gut functioning.

ANTIBIOTICS-BASEL (2022)

Article Multidisciplinary Sciences

Comprehensive RNA dataset of tissue and plasma from patients with esophageal cancer or precursor lesions

Kathleen Schoofs, Annouck Philippron, Francisco Avila Cobos, Jan Koster, Steve Lefever, Jasper Anckaert, Danny De Looze, Jo Vandesompele, Piet Pattyn, Katleen De Preter

Summary: This study conducted comprehensive RNA analysis of samples from esophageal adenocarcinoma patients, providing a unique resource for studying biomarkers and disease mechanisms. The dataset allows for comparison of tissue and liquid biopsy profiles, integration of coding and non-coding RNA patterns, and can serve as a validation dataset in other RNA landscaping studies.

SCIENTIFIC DATA (2022)

Article Oncology

Impact of increasing lymph node yield on staging, morbidity and survival after esophagectomy for esophageal adenocarcinoma

Sofie P. G. Henckens, Eliza R. C. Hagens, Mark I. van Berge Henegouwen, Sybren L. Meijer, Wietse J. Eshuis, Suzanne S. Gisbertz

Summary: This study investigates the impact of lymph node yield after transthoracic esophagectomy on lymph node metastasis, complications, and survival in patients with esophageal adenocarcinoma. The results demonstrate that a lymph node yield of 31 or higher is associated with an increased number of positive lymph nodes, improved disease-free survival, and overall survival, without increasing morbidity.
Article Biochemistry & Molecular Biology

How germline genes promote malignancy in cancer cells

Jan Willem Bruggeman, Jan Koster, Ans M. M. van Pelt, Dave Speijer, Geert Hamer

Summary: This article proposes a hypothesis that activating the germline program promotes cancer cell malignancy. The four hallmark processes of the germline, including meiosis, epigenetic plasticity, migration, and metabolic plasticity, enable germ cells and cancer cells to have replicative immortality. Especially, meiotic genes are frequently expressed in cancer, suggesting their potential role in oncogenesis.

BIOESSAYS (2023)

Article Biochemistry & Molecular Biology

Transcriptomic Differences Underlying the Activin-A Induced Large Osteoclast Formation in Both Healthy Control and Fibrodysplasia Ossificans Progressiva Osteoclasts

Ton Schoenmaker, Joy Zwaak, Bruno G. Loos, Richard Volckmann, Jan Koster, E. Marelise W. Eekhoff, Teun J. de Vries

Summary: Fibrodysplasia Ossificans Progressiva (FOP) is a rare genetic disease characterized by progressive heterotopic ossification that leads to immobility and premature death. It is caused by a mutation in the ACVR1 gene, resulting in altered response to Activin-A. Activin-A induces changes in osteoclastogenesis at the gene expression level, regardless of the presence of the mutated ACVR1 receptor. RNA sequencing analysis revealed differentially expressed genes and enriched pathways associated with osteoclast differentiation, cell fusion, and inflammation. These findings suggest that Activin-A plays a significant role in gene expression during osteoclast formation in FOP.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2023)

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