scdNet: a computational tool for single-cell differential network analysis

Mapping the Mouse Cell Atlas by Microwell-Seq

(2018) Xiaoping Han et al.   CELL

Linking transcriptional and genetic tumor heterogeneity through allele analysis of single-cell RNA-seq data

(2018) Jean Fan et al.   GENOME RESEARCH

Unravelling subclonal heterogeneity and aggressive disease states in TNBC through single-cell RNA-seq

(2018) Mihriban Karaayvaz et al.   Nature Communications

Differential gene network analysis from single cell RNA-seq

(2017) Yikai Wang et al.   Journal of Genetics and Genomics

The Human Cell Atlas: from vision to reality

(2017) Orit Rozenblatt-Rosen et al.   NATURE

Heterogeneity in Oct4 and Sox2 Targets Biases Cell Fate in 4-Cell Mouse Embryos

(2016) Mubeen Goolam et al.   CELL

Single-cell genome sequencing: current state of the science

(2016) Charles Gawad et al.   NATURE REVIEWS GENETICS

Differential network analysis reveals the genome-wide landscape of estrogen receptor modulation in hormonal cancers

(2016) Tzu-Hung Hsiao et al.   Scientific Reports

Single-Cell Co-expression Analysis Reveals Distinct Functional Modules, Co-regulation Mechanisms and Clinical Outcomes

(2016) Jie Wang et al.   PLoS Computational Biology

RNA-Seq of single prostate CTCs implicates noncanonical Wnt signaling in antiandrogen resistance

(2015) D. T. Miyamoto et al.   SCIENCE

Identification of peptide regions of SERPINA1 and ENOSF1 and their protein expression as potential serum biomarkers for gastric cancer

(2015) Juan Yang et al.   TUMOR BIOLOGY

Circulating Tumor Cell Clusters Are Oligoclonal Precursors of Breast Cancer Metastasis

(2014) Nicola Aceto et al.   CELL

Circulating Tumor Cells Predict Survival in Early Average-to-High Risk Breast Cancer Patients

(2014) Brigitte Rack et al.   JNCI-Journal of the National Cancer Institute

AR-V7 and Resistance to Enzalutamide and Abiraterone in Prostate Cancer

(2014) Emmanuel S. Antonarakis et al.   NEW ENGLAND JOURNAL OF MEDICINE

Pro-survival and anti-apoptotic properties of androgen receptor signaling by oxidative stress promote treatment resistance in prostate cancer

(2012) Masaki Shiota et al.   ENDOCRINE-RELATED CANCER

Re: Increased Survival with Enzalutamide in Prostate Cancer After Chemotherapy

(2012) Samir S. Taneja   JOURNAL OF UROLOGY

Differential network biology

(2012) Trey Ideker et al.   Molecular Systems Biology

Increased Survival with Enzalutamide in Prostate Cancer after Chemotherapy

(2012) Howard I. Scher et al.   NEW ENGLAND JOURNAL OF MEDICINE

Oxidative stress and androgen receptor signaling in the development and progression of castration-resistant prostate cancer

(2011) Masaki Shiota et al.   FREE RADICAL BIOLOGY AND MEDICINE

Metabolic and Mitochondrial Dysfunction in Early Mouse Embryos Following Maternal Dietary Protein Intervention1

(2009) Megan Mitchell et al.   BIOLOGY OF REPRODUCTION

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Circulating Tumor Cells Predict Survival Benefit from Treatment in Metastatic Castration-Resistant Prostate Cancer

(2008) J. S. de Bono et al.   CLINICAL CANCER RESEARCH