Integrating node embeddings and biological annotations for genes to predict disease-gene associations

A Comprehensive Survey of Graph Embedding: Problems, Techniques and Applications

(2018) HongYun Cai et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

Disease gene classification with metagraph representations

(2017) Sezin Kircali Ata et al.   METHODS

Network propagation: a universal amplifier of genetic associations

(2017) Lenore Cowen et al.   NATURE REVIEWS GENETICS

Structure-Based Identification, Characterization, and Disruption of Human Securin-Binding SH3 Domains in Lung Cancer

(2016) Keping Wang et al.   CANCER INVESTIGATION

DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants

(2016) Janet Piñero et al.   NUCLEIC ACIDS RESEARCH

Pathway-Dependent Effectiveness of Network Algorithms for Gene Prioritization

(2015) Jung Eun Shim et al.   PLoS One

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

Human symptoms–disease network

(2014) XueZhong Zhou et al.   Nature Communications

mRMRe: an R package for parallelized mRMR ensemble feature selection

(2013) Nicolas De Jay et al.   BIOINFORMATICS

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

(2013) Sandra Orchard et al.   NUCLEIC ACIDS RESEARCH

Prediction and Validation of Gene-Disease Associations Using Methods Inspired by Social Network Analyses

(2013) U. Martin Singh-Blom et al.   PLoS One

A network module-based method for identifying cancer prognostic signatures

(2012) Guanming Wu et al.   GENOME BIOLOGY

ProDiGe: Prioritization Of Disease Genes with multitask machine learning from positive and unlabeled examples

(2011) Fantine Mordelet et al.   BMC BIOINFORMATICS

The power of protein interaction networks for associating genes with diseases

(2010) Saket Navlakha et al.   BIOINFORMATICS

Genome-wide inferring gene–phenotype relationship by walking on the heterogeneous network

(2010) Yongjin Li et al.   BIOINFORMATICS

Network medicine: a network-based approach to human disease

(2010) Albert-László Barabási et al.   NATURE REVIEWS GENETICS

Network-Based Elucidation of Human Disease Similarities Reveals Common Functional Modules Enriched for Pluripotent Drug Targets

(2010) Silpa Suthram et al.   PLoS Computational Biology

Associating Genes and Protein Complexes with Disease via Network Propagation

(2010) Oron Vanunu et al.   PLoS Computational Biology

Walking the Interactome for Prioritization of Candidate Disease Genes

(2008) Sebastian Köhler et al.   AMERICAN JOURNAL OF HUMAN GENETICS