Classification, substrate specificity and structural features of D-2-hydroxyacid dehydrogenases: 2HADH knowledgebase

Structural, Biochemical, and Evolutionary Characterizations of Glyoxylate/Hydroxypyruvate Reductases Show Their Division into Two Distinct Subfamilies

(2018) Jan Kutner et al.   BIOCHEMISTRY

Refining the macromolecular model – achieving the best agreement with the data from X-ray diffraction experiment

(2018) Ivan G. Shabalin et al.   Crystallography Reviews

Molstack-Interactive visualization tool for presentation, interpretation, and validation of macromolecules and electron density maps

(2017) Przemyslaw J. Porebski et al.   PROTEIN SCIENCE

Structural and Kinetic Studies of Formate Dehydrogenase from Candida boidinii

(2016) Qi Guo et al.   BIOCHEMISTRY

BRENDA in 2017: new perspectives and new tools in BRENDA

(2016) Sandra Placzek et al.   NUCLEIC ACIDS RESEARCH

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Structural basis for double cofactor specificity in a new formate dehydrogenase from the acidobacterium Granulicella mallensis MP5ACTX8

(2015) Stefano Fogal et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Identification of the Elusive Pyruvate Reductase ofChlamydomonas reinhardtiiChloroplasts

(2015) Steven J. Burgess et al.   PLANT AND CELL PHYSIOLOGY

Regulation of Mycobacterium tuberculosis d-3-Phosphoglycerate Dehydrogenase by Phosphate-Modulated Quaternary Structure Dynamics and a Potential Role for Polyphosphate in Enzyme Regulation

(2014) Xiao Lan Xu et al.   BIOCHEMISTRY

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Crystal structures and kinetics of Type III 3-phosphoglycerate dehydrogenase reveal catalysis by lysine

(2014) Rohit K. Singh et al.   FEBS Journal

Crystal structures of human CtBP in complex with substrate MTOB reveal active site features useful for inhibitor design

(2014) Brendan J. Hilbert et al.   FEBS LETTERS

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

Efficient Production of (R)-2-Hydroxy-4-Phenylbutyric Acid by Using a Coupled Reconstructed d-Lactate Dehydrogenase and Formate Dehydrogenase System

(2014) Binbin Sheng et al.   PLoS One

Efficient CO2-Reducing Activity of NAD-Dependent Formate Dehydrogenase from Thiobacillus sp. KNK65MA for Formate Production from CO2 Gas

(2014) Hyunjun Choe et al.   PLoS One

Nicotinamide Adenine Dinucleotide-induced Multimerization of the Co-repressor CtBP1 Relies on a Switching Tryptophan

(2013) Dana L. Madison et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Highly stereoselective biosynthesis of (R)-α-hydroxy carboxylic acids through rationally re-designed mutation of d-lactate dehydrogenase

(2013) Zhaojuan Zheng et al.   Scientific Reports

Investigation of the Role of Arg301 Identified in the X-ray Structure of Phosphite Dehydrogenase

(2012) John E. Hung et al.   BIOCHEMISTRY

Crystal Structures of Phosphite Dehydrogenase Provide Insights into Nicotinamide Cofactor Regeneration

(2012) Yaozhong Zou et al.   BIOCHEMISTRY

Molecular modeling of formate dehydrogenase: the formation of the Michaelis complex

(2012) Dmitry K. Nilov et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Structural characterization of a D-isomer specific 2-hydroxyacid dehydrogenase from Lactobacillus delbrueckii ssp. bulgaricus

(2012) Simon J. Holton et al.   JOURNAL OF STRUCTURAL BIOLOGY

Contrasting catalytic and allosteric mechanisms for phosphoglycerate dehydrogenases

(2011) Gregory A. Grant   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

The Moderately Efficient Enzyme: Evolutionary and Physicochemical Trends Shaping Enzyme Parameters

(2011) Arren Bar-Even et al.   BIOCHEMISTRY

Investigation of formate transport through the substrate channel of formate dehydrogenase by steered molecular dynamics simulations

(2011) D. K. Nilov et al.   BIOCHEMISTRY-MOSCOW

Novel fungal phenylpyruvate reductase belongs to d-isomer-specific 2-hydroxyacid dehydrogenase family

(2011) Taiki Fujii et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Kinetic resolution of 2-hydroxybutanoate racemic mixtures by NAD-independent l-lactate dehydrogenase

(2011) Chao Gao et al.   BIORESOURCE TECHNOLOGY

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases

(2011) R. Caspi et al.   NUCLEIC ACIDS RESEARCH

Enzyme Promiscuity: A Mechanistic and Evolutionary Perspective

(2010) Olga Khersonsky and Dan S. Tawfik   Annual Review of Biochemistry

Multiple Turnovers of the Nicotino-Enzyme PdxB Require α-Keto Acids as Cosubstrates

(2010) Johannes Rudolph et al.   BIOCHEMISTRY

A new chemo-enzymatic route to chiral 2-hydroxy-4-phenylbutyrates by combining lactonase-mediated resolution with hydrogenation over Pd/C

(2010) Bing Chen et al.   CHEMICAL COMMUNICATIONS

A novel NADP+-dependent formate dehydrogenase from Burkholderia stabilis 15516: Screening, purification and characterization

(2010) Rujirat Hatrongjit et al.   ENZYME AND MICROBIAL TECHNOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Structures of the apo and holo forms of formate dehydrogenase from the bacteriumMoraxellasp. C-1: towards understanding the mechanism of the closure of the interdomain cleft

(2009) I. G. Shabalin et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Structure ofD-lactate dehydrogenase fromAquifex aeolicuscomplexed with NAD+and lactic acid (or pyruvate)

(2009) Svetlana V. Antonyuk et al.   Acta Crystallographica Section F-Structural Biology and Crystallization Communications

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

phyloXML: XML for evolutionary biology and comparative genomics

(2009) Mira V Han et al.   BMC BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Racemase activity effected by two dehydrogenases in sulfolactate degradation by Chromohalobacter salexigens: purification of (S)-sulfolactate dehydrogenase

(2009) K. Denger et al.   MICROBIOLOGY-SGM

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Protein Dynamism and Evolvability

(2009) N. Tokuriki et al.   SCIENCE

A New Family ofD-2-Hydroxyacid Dehydrogenases That ComprisesD-Mandelate Dehydrogenases and 2-Ketopantoate Reductases

(2008) Yusuke WADA et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

A Cytosolic Pathway for the Conversion of Hydroxypyruvate to Glycerate during Photorespiration in Arabidopsis

(2008) S. Timm et al.   PLANT CELL