Measures of co-expression for improved function prediction of long non-coding RNAs

lncFunTK: a toolkit for functional annotation of long noncoding RNAs

(2018) Jiajian Zhou et al.   BIOINFORMATICS

Prostate cancer-associated lncRNAs

(2018) Yuichi Mitobe et al.   CANCER LETTERS

Transforming growth factor-β signalling in renal fibrosis: from Smads to non-coding RNAs

(2018) Patrick Ming-Kuen Tang et al.   JOURNAL OF PHYSIOLOGY-LONDON

Epigenetic silencing of tumor suppressor gene CDKN1A by oncogenic long non-coding RNA SNHG1 in cholangiocarcinoma

(2018) Yang Yu et al.   Cell Death & Disease

LncFunNet: an integrated computational framework for identification of functional long noncoding RNAs in mouse skeletal muscle cells

(2017) Jiajian Zhou et al.   NUCLEIC ACIDS RESEARCH

Current advances of long non-coding RNA highly upregulated in liver cancer in human tumors

(2017) Zhonghua Ma et al.   OncoTargets and Therapy

TopoICSim: a new semantic similarity measure based on gene ontology

(2016) Rezvan Ehsani et al.   BMC BIOINFORMATICS

Computational Approaches for Functional Prediction and Characterisation of Long Noncoding RNAs

(2016) Bethany Signal et al.   TRENDS IN GENETICS

PCA3 long noncoding RNA modulates the expression of key cancer-related genes in LNCaP prostate cancer cells

(2016) Ana Emília Goulart Lemos et al.   TUMOR BIOLOGY

Roles, Functions, and Mechanisms of Long Non-coding RNAs in Cancer

(2016) Yiwen Fang et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

LncRNA2Function: a comprehensive resource for functional investigation of human lncRNAs based on RNA-seq data

(2015) Qinghua Jiang et al.   BMC GENOMICS

Unveiling the hidden function of long non-coding RNA by identifying its major partner-protein

(2015) Yongfang Yang et al.   Cell and Bioscience

The Split-Apply-Combine Strategy for Data Analysis

(2015) Hadley Wickham   Journal of Statistical Software

lncRNAtor: a comprehensive resource for functional investigation of long non-coding RNAs

(2014) Charny Park et al.   BIOINFORMATICS

High Expression of CAI2, a 9p21-Embedded Long Noncoding RNA, Contributes to Advanced-Stage Neuroblastoma

(2014) L. M. Barnhill et al.   CANCER RESEARCH

LincRNA-p21 Activates p21 In cis to Promote Polycomb Target Gene Expression and to Enforce the G1/S Checkpoint

(2014) Nadya Dimitrova et al.   MOLECULAR CELL

Endogenous miRNA Sponge lincRNA-RoR Regulates Oct4, Nanog, and Sox2 in Human Embryonic Stem Cell Self-Renewal

(2013) Yue Wang et al.   DEVELOPMENTAL CELL

Long Noncoding RNAs: Past, Present, and Future

(2013) J. T. Y. Kung et al.   GENETICS

Comparative genetic analyses point to HCP5 as susceptibility locus for HCV-associated hepatocellular carcinoma

(2013) Christian M. Lange et al.   JOURNAL OF HEPATOLOGY

Long noncoding RNAs regulate adipogenesis

(2013) Lei Sun et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Long Noncoding RNA Mediates Both Activation and Repression of Immune Response Genes

(2013) S. Carpenter et al.   SCIENCE

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

PCA3 noncoding RNA is involved in the control of prostate-cancer cell survival and modulates androgen receptor signaling

(2012) Luciana Bueno Ferreira et al.   BMC CANCER

GENCODE: The reference human genome annotation for The ENCODE Project

(2012) J. Harrow et al.   GENOME RESEARCH

Long non-coding RNAs function annotation: a global prediction method based on bi-colored networks

(2012) Xingli Guo et al.   NUCLEIC ACIDS RESEARCH

Genomic Maps of Long Noncoding RNA Occupancy Reveal Principles of RNA-Chromatin Interactions

(2011) Ci Chu et al.   MOLECULAR CELL

lincRNAs act in the circuitry controlling pluripotency and differentiation

(2011) Mitchell Guttman et al.   NATURE

Large-scale prediction of long non-coding RNA functions in a coding–non-coding gene co-expression network

(2011) Qi Liao et al.   NUCLEIC ACIDS RESEARCH

The genomic binding sites of a noncoding RNA

(2011) M. D. Simon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The H19 locus: Role of an imprinted non-coding RNA in growth and development

(2010) Anne Gabory et al.   BIOESSAYS

GOSemSim: an R package for measuring semantic similarity among GO terms and gene products

(2010) G. Yu et al.   BIOINFORMATICS

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

(2009) Mitchell Guttman et al.   NATURE

Long non-coding RNAs: insights into functions

(2009) Tim R. Mercer et al.   NATURE REVIEWS GENETICS

Association of HLA-C and HCP5 gene regions with the clinical course of HIV-1 infection

(2008) Daniëlle van Manen et al.   AIDS