Analyzing the similarity of samples and genes by MG-PCC algorithm, t-SNE-SS and t-SNE-SG maps

Heterogeneity within the PF-EPN-B ependymoma subgroup

(2018) Florence M. G. Cavalli et al.   ACTA NEUROPATHOLOGICA

Sorting Five Human Tumor Types Reveals Specific Biomarkers and Background Classification Genes

(2018) Kimberly E. Roche et al.   Scientific Reports

Detecting Clinically Meaningful Shape Clusters in Medical Image Data: Metrics Analysis for Hierarchical Clustering Applied to Healthy and Pathological Aortic Arches

(2017) Jan L. Bruse et al.   IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING

Multiple-cumulative probabilities used to cluster and visualize transcriptomes

(2017) Xingang Jia et al.   FEBS Open Bio

Extensive Transcriptomic and Genomic Analysis Provides New Insights about Luminal Breast Cancers

(2016) Inna Tishchenko et al.   PLoS One

On the selection of appropriate distances for gene expression data clustering

(2014) Pablo A Jaskowiak et al.   BMC BIOINFORMATICS

Visualization of genetic disease-phenotype similarities by multiple maps t-SNE with Laplacian regularization

(2014) Weiwei Xu et al.   BMC Medical Genomics

Wrangling Phosphoproteomic Data to Elucidate Cancer Signaling Pathways

(2013) Mark L. Grimes et al.   PLoS One

An intuitive graphical visualization technique for the interrogation of transcriptome data

(2011) Natascha Bushati et al.   NUCLEIC ACIDS RESEARCH

Identification of a Novel Biomarker, SEMA5A, for Non-Small Cell Lung Carcinoma in Nonsmoking Women

(2010) T.-P. Lu et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

Visualization of omics data for systems biology

(2010) Nils Gehlenborg et al.   NATURE METHODS

Normalized Mutual Information Feature Selection

(2009) P.A. Estevez et al.   IEEE TRANSACTIONS ON NEURAL NETWORKS

Genome-scale cluster analysis of replicated microarrays using shrinkage correlation coefficient

(2008) Jianchao Yao et al.   BMC BIOINFORMATICS

A non-parametric meta-analysis approach for combining independent microarray datasets: application using two microarray datasets pertaining to chronic allograft nephropathy

(2008) Xiangrong Kong et al.   BMC GENOMICS

Dimensionality Reduction of Clustered Data Sets

(2008) Guido Sanguinetti   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

Comparing the Characteristics of Gene Expression Profiles Derived by Univariate and Multivariate Classification Methods

(2008) Manuela Zucknick et al.   Statistical Applications in Genetics and Molecular Biology