Improved xylose tolerance and 2,3-butanediol production of Klebsiella pneumoniae by directed evolution of rpoD and the mechanisms revealed by transcriptomics

Genetic improvement of xylose metabolism by enhancing the expression of pentose phosphate pathway genes in Saccharomyces cerevisiae IR-2 for high-temperature ethanol production

(2017) Yosuke Kobayashi et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Construction of pyruvate producing strain with intact pyruvate dehydrogenase and genome-wide transcription analysis

(2017) Maohua Yang et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Cofactor Engineering for Enhanced Production of Diols by Klebsiella pneumoniae From Co-Substrate

(2017) Meng Wang et al.   Biotechnology Journal

Tailoring of global transcription sigma D factor by random mutagenesis to improve Escherichia coli tolerance towards low-pHs

(2016) Xi Gao et al.   JOURNAL OF BIOTECHNOLOGY

Overexpressions of xylA and xylB in Klebsiella pneumoniae Lead to Enhanced 1,3-Propanediol Production by Cofermentation of Glycerol and Xylose

(2016) Xinyao Lu et al.   JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY

Using global transcription machinery engineering (gTME) to improve ethanol tolerance of Zymomonas mobilis

(2016) Furong Tan et al.   Microbial Cell Factories

Adaptive laboratory evolution of Klebsiella pneumoniae for improving 2,3-butanediol production

(2016) Hongbiao Li et al.   Bioengineered

Outlook for ethanol production costs in Brazil up to 2030, for different biomass crops and industrial technologies

(2015) J.G.G. Jonker et al.   APPLIED ENERGY

Metabolic engineering of Bacillus subtilis for redistributing the carbon flux to 2,3-butanediol by manipulating NADH levels

(2015) Taowei Yang et al.   Biotechnology for Biofuels

Polyphosphate kinase of Lysinibacillus sphaericus and its effects on accumulation of polyphosphate and bacterial growth

(2015) Tingyu Shi et al.   MICROBIOLOGICAL RESEARCH

Effect of the inactivation of lactate dehydrogenase, ethanol dehydrogenase, and phosphotransacetylase on 2,3-butanediol production in Klebsiella pneumoniae strain

(2014) Xuewu Guo et al.   Biotechnology for Biofuels

Production of 2,3-butanediol from xylose by engineered Saccharomyces cerevisiae

(2014) Soo-Jung Kim et al.   JOURNAL OF BIOTECHNOLOGY

Glycerol-3-Phosphate Acyltransferase Contributes to Triacylglycerol Biosynthesis, Lipid Droplet Formation, and Host Invasion in Metarhizium robertsii

(2013) Qiang Gao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

De novo assembly and characterization of transcriptome using Illumina paired-end sequencing and identification of CesA gene in ramie (Boehmeria nivea L. Gaud)

(2013) Touming Liu et al.   BMC GENOMICS

De novo transcriptome analysis-gained insights into physiological and metabolic characteristics of Sargassum thunbergii (Fucales, Phaeophyceae)

(2013) Fuli Liu et al.   JOURNAL OF APPLIED PHYCOLOGY

Improving Ethanol Tolerance of Escherichia coli by Rewiring Its Global Regulator cAMP Receptor Protein (CRP)

(2013) Huiqing Chong et al.   PLoS One

Significant Rewiring of the Transcriptome and Proteome of an Escherichia coli Strain Harboring a Tailored Exogenous Global Regulator IrrE

(2012) Tingjian Chen et al.   PLoS One

Random mutagenesis of global transcription factor cAMP receptor protein for improved osmotolerance

(2011) Hongfang Zhang et al.   BIOTECHNOLOGY AND BIOENGINEERING

Engineering Saccharomyces cerevisiae for efficient anaerobic xylose fermentation: Reflections and perspectives

(2011) Zhen Cai et al.   Biotechnology Journal

An optimized method for suicide vector-based allelic exchange in Klebsiella pneumoniae

(2011) Jon Jurriaan van Aartsen et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

A UV-induced mutant of Pichia stipitis with increased ethanol production from xylose and selection of a spontaneous mutant with increased ethanol tolerance

(2010) Takashi Watanabe et al.   BIORESOURCE TECHNOLOGY

Key technologies for bioethanol production from lignocellulose

(2010) Hongzhang Chen et al.   BIOTECHNOLOGY ADVANCES

Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stress

(2010) Takaaki Horinouchi et al.   BMC GENOMICS

Regulatory and metabolic rewiring during laboratory evolution of ethanol tolerance in E. coli

(2010) Hani Goodarzi et al.   Molecular Systems Biology

Synthetic biology: applications come of age

(2010) Ahmad S. Khalil et al.   NATURE REVIEWS GENETICS

Ethanol production from xylose in engineered Saccharomyces cerevisiae strains: current state and perspectives

(2009) Akinori Matsushika et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

IrrE, a Global Regulator of Extreme Radiation Resistance in Deinococcus radiodurans, Enhances Salt Tolerance in Escherichia coli and Brassica napus

(2009) Jie Pan et al.   PLoS One

The importance of engineering physiological functionality into microbes

(2009) Yanping Zhang et al.   TRENDS IN BIOTECHNOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS