Review
Medicine, General & Internal
Darius Riziki Martin, Nicole Remaliah Sibuyi, Phumuzile Dube, Adewale Oluwaseun Fadaka, Ruben Cloete, Martin Onani, Abram Madimabe Madiehe, Mervin Meyer
Summary: The transmission of Tuberculosis is rapid and impacts healthcare systems globally. Current diagnostic methods are time-consuming and costly. By utilizing aptamers instead of antibodies, new rapid tests can be developed that are more cost-effective, stable, and reliable.
Review
Chemistry, Analytical
Leyla Karadurmus, S. Irem Kaya, Ahmet Cetinkaya, Sibel A. Ozkan
Summary: Lack of timely detection or proper monitoring of diseases is still a leading cause of death. Developing a portable device similar to a portable laboratory for rapid disease diagnosis is crucial. Electroanalytical methods, particularly using nanomaterials like Mxenes, are cost-effective and highly sensitive for point-of-care diagnostics. This review provides an overview of recent studies on electrochemical POC diagnostics using Mxenes and offers insights into improving selectivity and sensitivity in sensor studies.
TRAC-TRENDS IN ANALYTICAL CHEMISTRY
(2023)
Article
Chemistry, Analytical
Qian Gao, Yang Li, Qi Li, Cuiping Ma, Chao Shi
Summary: A sensitive dual electrochemical-colorimetric point-of-care sensor was developed for the rapid detection of M. pneumoniae. The sensor showed excellent performance and sensitivity, and was validated in clinical samples. The entire detection process was time-efficient and the results were monitored by electrochemical signal and solution color change.
ANALYTICAL LETTERS
(2023)
Article
Chemistry, Analytical
Kunlun Jiang, Jingrui Wu, Yuwei Qiu, Yun Young Go, Kiwon Ban, Hyun June Park, Jung-Hoon Lee
Summary: The PPT-cPCR method is a fast, sensitive, inexpensive, and simple nucleic acid detection technique that allows for visual detection of DNA targets and easy access to quantitative information using a spectrophotometer and a smartphone.
SENSORS AND ACTUATORS B-CHEMICAL
(2021)
Article
Biophysics
Zhiying Wang, Yang Wang, Long Lin, Tao Wu, Zhenzhen Zhao, Binwu Ying, Lingqian Chang
Summary: A low-cost, portable finger-driven microfluidic chip was developed for rapid on-site detection of tuberculosis, showing unique advantages in avoiding risks of infection or environmental contamination and enabling multiplexed detection to differentiate different strains of Mycobacterium. In clinical trials, the platform demonstrated high specificity and sensitivity.
BIOSENSORS & BIOELECTRONICS
(2022)
Review
Materials Science, Multidisciplinary
Nazente Atceken, Muhammad Munzer Alseed, Sajjad Rahmani Dabbagh, Ali K. Yetisen, Savas Tasoglu
Summary: LAMP technology is a fast, efficient, and low-cost diagnostic method for pathogen detection, which can be applied to various bacteria, viruses, and parasitic pathogens. In addition, LAMP technology can also be used for SNP genotyping and mutation detection.
ADVANCED ENGINEERING MATERIALS
(2023)
Article
Biochemistry & Molecular Biology
Bruna de Oliveira Coelho, Heloisa Bruna Soligo Sanchuki, Dalila Luciola Zanette, Jeanine Marie Nardin, Hugo Manuel Paz Morales, Bruna Fornazari, Mateus Nobrega Aoki, Lucas Blanes
Summary: This study investigates the colorimetric RT-LAMP technique for detecting SARS-CoV-2, highlighting the presence of three color clusters and the correlation between viral load and color change. Results show a sensitivity of 93.8% and specificity of 90.4%, with the novel finding of an orange color cluster indicating low viral loads. The study concludes that colorimetric RT-LAMP is efficient for COVID-19 diagnosis, particularly in the early stages of infection.
MOLECULAR MEDICINE
(2021)
Article
Medicine, General & Internal
Bruna W. W. Raddatz, Felipe J. J. Rabello, Rafael Benedetti, Gisleine J. J. Steil, Louise M. M. Imamura, Edson Y. S. Kim, Erika B. B. Santiago, Luis F. Hartmann, Joao V. Predebon, Bruna M. M. Delfino, Meri B. B. Nogueira, Jucelia S. dos Santos, Breno G. G. da Silva, Diego R. P. Nicollete, Bernardo M. M. de Almeida, Sergio R. R. Rogal Jr, Marcus V. M. Figueredo
Summary: Quick and reliable mass testing is necessary for SARS-CoV-2 containment. Point-of-Care (POC) tests using Loop-Mediated Isothermal Amplification (LAMP) have emerged as a useful diagnostic tool during the COVID-19 pandemic. However, colorimetric LAMP tests have limitations in stability and false-positive results. This study presents a portable device, Hilab Molecular, that utilizes IoT and AI to pre-analyze colorimetric data, and manufacturing procedures to increase the stability of colorimetric RT-LAMP tests.
Article
Thermodynamics
Debayan Das, P. K. Panigrahi
Summary: The study conducted thermal design and energy consumption analysis of a paper-based LAMP point-of-care device using CFD analysis for the first time. It was found that two discrete heating configurations with high horizontal clearance were effective in reducing energy consumption, and two portable AA batteries were sufficient for device operation. Overall, the research successfully demonstrated energy optimization and operational speed of the POC medical device through detailed thermal analysis.
APPLIED THERMAL ENGINEERING
(2021)
Article
Biotechnology & Applied Microbiology
Yu-Ting Tsao, Chung-Yao Yang, Yun-Chiao Wen, Ting-Chang Chang, Koji Matsuura, Yu Chen, Chao-Min Cheng
Summary: This study developed a colorimetric semen analytical method that can distinguish semen samples with low total motile sperm concentration from those with normal motile sperm concentration. The method is one-step, inexpensive, and equipment-free, with validation in a 42-sample clinical trial. Visual evaluation and smartphone application were used to assess the results, showing potential for routine healthcare screening and private, in-home self-assessment.
BIOENGINEERING & TRANSLATIONAL MEDICINE
(2021)
Article
Chemistry, Analytical
Melissa Banks, Farbod Amirghasemi, Evelyn Mitchell, Maral P. S. Mousavi
Summary: Bacterial vaginosis (BV) is a common vaginal infection that often goes undetected due to its asymptomatic nature, but it can lead to serious health risks if left untreated. In this study, researchers developed a low-cost disposable sensor called Home-Based Electrochemical Rapid Sensor (HERS) to diagnose BV at home. By utilizing HERS and potentiometric readout, the sensor was able to detect trimethylamine (TMA) in simulated vaginal fluid with a clinically relevant limit of detection. This technology has the potential to minimize the risks associated with BV and improve early detection.
Article
Chemistry, Multidisciplinary
Rajamanickam Sivakumar, Vu Phong Dinh, Nae Yoon Lee
Summary: We developed a colorimetric strategy based on copper sulfate (CuSO4)-initiated diphenylamine (DPA) coupled with loop-mediated isothermal amplification (LAMP) for rapid detection of SARS-CoV-2 and Enterococcus faecium. Acid hydrolysis of LAMP amplicons was used to detect the DNA and generate a blue color. The method successfully detected low quantities of SARS-CoV-2 RNA and E. faecium, indicating its advantages. Multiplex detection of pathogens was performed using a foldable microdevice, confirming the practical applicability of the method.
ACS SUSTAINABLE CHEMISTRY & ENGINEERING
(2023)
Article
Immunology
Hui Chen, Chang Sun, Yang Wang, Xiaojiao Gao, Jinwei You, Wanwan Yu, Ning Sun, Yang Yang, Xiaojun Li
Summary: The study developed a MIRA amplification method for rapid detection of SARS-CoV-2, showing efficient amplification of duplex targets in a low volume and monitoring with lateral flow dipsticks. The assay was able to amplify efficiently without RNA extraction and demonstrated good performance in experiments.
FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY
(2021)
Article
Chemistry, Analytical
Moon Hyeok Choi, Young Jun Seo
Summary: A novel hairpin structure-mediated diagnostic method has been developed for the colorimetric detection of miRNA, with high sensitivity (LOD = 132 aM) and selectivity, completed in just 30 minutes. The system can also detect miRNA using fluorescence with similar sensitivity, demonstrating the dual-sensing properties of the probe.
ANALYTICA CHIMICA ACTA
(2021)
Article
Agronomy
Ali celik, Ali Ferhan Morca
Summary: A colorimetric and real-time loop-mediated isothermal amplification (cr-LAMP) assay was developed for Wheat dwarf virus (WDV) detection, which showed high specificity and 100-fold higher sensitivity compared to traditional PCR. This fast and effective assay can be easily evaluated using basic equipment, making it suitable for agricultural settings where laboratory capacity is limited.
Article
Biology
Bingyin Peng, Naga Chandra Bandari, Zeyu Lu, Christopher B. Howard, Colin Scott, Matt Trau, Geoff Dumsday, Claudia E. Vickers
Summary: This study addresses the problem of temporal control in microbial metabolic engineering by using a modular engineering approach. New genetic circuits were designed and constructed to achieve precise control of heterologous pathways driven by the GAL promoter, resulting in increased production efficiency.
COMMUNICATIONS BIOLOGY
(2022)
Review
Biochemistry & Molecular Biology
Miljan Stupar, Juanelle Furness, Christopher J. De Voss, Lendl Tan, Nicholas P. West
Summary: This review describes the role of two-component systems in bacterial pathogenesis, with a focus on the role of sensor kinases of Mycobacterium tuberculosis. These proteins enable pathogenic mycobacteria to monitor their environment, sense and respond to signals, and adapt to their intracellular lifestyle.
MOLECULAR MICROBIOLOGY
(2022)
Article
Multidisciplinary Sciences
Bingyin Peng, Lygie Esquirol, Zeyu Lu, Qianyi Shen, Li Chen Cheah, Christopher B. Howard, Colin Scott, Matt Trau, Geoff Dumsday, Claudia E. Vickers
Summary: Insufficient gene expression levels causing bottlenecks in metabolic pathways are a problem in industrial bioproduction. Current approaches to increase gene dosage have limitations. This study presents HapAmp, a method that uses haploinsufficiency to drive gene amplification in vivo. HapAmp allows efficient integration of heterologous gene copies, leading to significant improvements in metabolic engineering and protein production in yeast.
NATURE COMMUNICATIONS
(2022)
Article
Immunology
Cathryn M. Kolka, Julie Webster, Ailin Lepletier, Clay Winterford, Ian Brown, Renee S. Richards, Wioleta M. Zelek, Yilang Cao, Ramlah Khamis, Karthik B. Shanmugasundaram, Alain Wuethrich, Matt Trau, Sandra Brosda, Andrew Barbour, Alok K. Shah, Guy D. Eslick, Nicholas J. Clemons, B. Paul Morgan, Michelle M. Hill
Summary: This study confirms the increased formation of C5b-9 in esophageal adenocarcinoma (EAC) and demonstrates the capability and heterogeneity in C5b-9 formation and shedding in Barrett's Esophagus (BE) and EAC cell lines following sublytic C9 exposure.
FRONTIERS IN IMMUNOLOGY
(2022)
Article
Chemistry, Analytical
Shuvashis Dey, Emtiaz Ahmed, Pranjal Satishchandra Somvanshi, Abu Ali Ibn Sina, Alain Wuethrich, Matt Trau
Summary: In this study, a miniaturized biosensing platform with dual readout schemes (electrochemical and SERS) was developed for rapid cancer screening and specific biomarker expression analysis. The method utilizes controlled nanomixing under electrohydrodynamic conditions to isolate cancer-associated circulating proteins and employs SERS nanotags for sensitive detection. The results demonstrate the potential of this dual detection biosensor for analyzing individual biomarker levels as low as 10 pg.
Article
Biology
Sophie E. Kenny, Fiach Antaw, Warwick J. Locke, Christopher B. Howard, Darren Korbie, Matt Trau
Summary: Protein and drug engineering play a crucial role in medicine and research, but the traditional trial and error approach to discovering therapeutic molecular interactions has its limitations. The use of big data and artificial intelligence has the potential to revolutionize this process, allowing for predictive design of new molecules based on target structure and desired function. This article evaluates the bottom-up approach and discusses the recent advances and prospects of a top-down approach.
Article
Chemistry, Analytical
Junrong Li, Alain Wuethrich, Zhen Zhang, Jing Wang, Lynlee L. Lin, Andreas Behren, Yuling Wang, Matt Trau
Summary: This study developed a surface-enhanced Raman scattering (SERS) assay to predict the response of melanoma patients to immune checkpoint blockade (ICB) therapy. By measuring both ensemble and single-cell CTCs, the assay revealed tumor heterogeneity and provided a comprehensive CTC phenotype for decision-making.
ANALYTICAL CHEMISTRY
(2022)
Article
Chemistry, Analytical
Fahimeh Farokhinejad, Junrong Li, Leon E. Hugo, Christopher B. Howard, Alain Wuethrich, Matt Trau
Summary: This study reports an innovative nanobased immunoassay platform for the early, specific, and ultrasensitive detection of DENV2 virus in infected mosquitoes. The platform uses nanomaterials and yeast affinity bionanofragments to enhance the sensitivity and specificity of detection, and employs electrohydrodynamically driven nanomixing to reduce nonspecific interactions. These nanotechnologies provide a significant innovation for preventing the transmission of DENV2.
ANALYTICAL CHEMISTRY
(2022)
Article
Chemistry, Analytical
Jing Wang, Kevin M. Koo, Matt Trau
Summary: A portable surface-enhanced Raman spectroscopy (SERS) assay for multiplex cell surface immunophenotyping was presented. The assay demonstrated excellent analytical performance with advantages such as quick sample-to-result turnaround time, multiplexing capability, and small equipment footprint. The results correlated well with flow cytometry.
ANALYTICAL CHEMISTRY
(2022)
Article
Chemistry, Medicinal
Lisa Barbaro, Gayathri Nagalingam, James A. Triccas, Lendl Tan, Nicholas P. West, Daniel L. Priebbenow, Jonathan B. Baell
Summary: The clinical use of bedaquiline has been limited due to safety concerns. Recent investigations have found that modification of the B- and C-ring units of bedaquiline can lead to the development of new compounds with potent anti-tubercular activity but improved safety. Concurrent modification of the A-, B-, and C-ring units in bedaquiline variants has been shown to result in compounds with relatively potent anti-tubercular activity and reduced safety issues.
Article
Multidisciplinary Sciences
Andrew D. Johnston, Jennifer Lu, Darren Korbie, Matt Trau
Summary: This study elucidates how PCR-based methods quantify intact regions in fragmented DNA, and details the development of multiplex PCR panels for quantifying fragmented DNA. Through mathematical equations and PCR panels, the amplification probability of DNA fragments and percentage of intact regions can be better understood and estimated.
SCIENTIFIC REPORTS
(2022)
Article
Chemistry, Multidisciplinary
Junrong Li, Abu A. Sina, Fiach Antaw, David Fielding, Andreas Moller, Richard Lobb, Alain Wuethrich, Matt Trau
Summary: This study investigates the use of small extracellular vesicles (sEVs) molecular profiles in differentiating malignant and benign lung nodules via a liquid biopsy-based approach. The researchers develop a novel chip called DECODE that can analyze sEV biomarkers expression and generate digitally acquired sEV molecular profiles. The results show that DECODE can successfully separate malignant from benign lung nodules, suggesting its potential for non-invasive characterization of lung nodules found in lung cancer screening.
Article
Chemistry, Physical
Liwen Yuan, Yanpin Chen, Longfeng Ke, Quan Zhou, Jiayou Chen, Min Fan, Alain Wuethrich, Matt Trau, Jing Wang
Summary: Developing a minimally invasive technique for early-stage lung cancer detection is crucial. However, detecting rare tumor-associated extracellular vesicles (EVs) in blood remains challenging. In this study, we integrated gold core-silver shell nanoparticles and nanoscopic mixing in a microfluidic assay to accurately analyze EVs in plasma without pre-isolation. Our nanostrategy achieved high sensitivity and specificity in differentiating early-stage lung cancer from benign lung diseases, showing great potential for detecting the early occurrence of lung cancer.
NANOSCALE HORIZONS
(2023)
Article
Chemistry, Medicinal
Chee Wei Ang, Brendon M. Lee, Colin J. Jackson, Yuehong Wang, Scott G. Franzblau, Amanda F. Francisco, John M. Kelly, Paul Bernhardt, Lendl Tan, Nicholas P. West, Melissa L. Sykes, Alexandra O. Hinton, Raghu Bolisetti, Vicky M. Avery, Matthew A. Cooper, Mark A. T. Blaskovich
Summary: Tuberculosis and parasitic infections pose a significant threat to public health and economic growth worldwide. This study explores a new subclass of bicyclic nitroimidazole compounds and their potential as treatments for tuberculosis and Chagas disease, demonstrating promising results in vitro and in vivo.
JOURNAL OF MEDICINAL CHEMISTRY
(2022)
Review
Genetics & Heredity
Nicolas Constantin, Abu Ali Ibn Sina, Darren Korbie, Matt Trau
Summary: Liquid biopsy testing has emerged as a promising approach for screening multiple cancers simultaneously, offering the potential to increase early cancer detection rates and improve population health. Utilizing circulating tumor DNA analysis of methylation biomarkers could enhance the accuracy of cancer detection and provide valuable information for clinical decision making and patient care improvement.