Improving biofuel production in phototrophic microorganisms with systems biology

Metabolic engineering ofEscherichia colifor biofuel production

(2011) Peng Xu et al.   Biofuels-UK

Phosphoproteomics for the Masses

(2010) Paul A. Grimsrud et al.   ACS Chemical Biology

Monitoring Real-Time Metabolism of Living Cells by Fast Two-Dimensional NMR Spectroscopy

(2010) Andrea Motta et al.   ANALYTICAL CHEMISTRY

Lipid analysis of Neochloris oleoabundans by liquid state NMR

(2010) C.M. Beal et al.   BIOTECHNOLOGY AND BIOENGINEERING

Metabolomics and Atherosclerosis

(2010) Sascha N. Goonewardena et al.   Current Atherosclerosis Reports

Increased Lipid Accumulation in the Chlamydomonas reinhardtiista7-10Starchless Isoamylase Mutant and Increased Carbohydrate Synthesis in Complemented Strains

(2010) Victoria H. Work et al.   EUKARYOTIC CELL

Genetic Engineering of Algae for Enhanced Biofuel Production

(2010) Randor Radakovits et al.   EUKARYOTIC CELL

Systems-wide proteomic characterization of combinatorial post-translational modification patterns

(2010) Nicolas L Young et al.   Expert Review of Proteomics

Uncovering the metabolomic fingerprint of breast cancer

(2010) Catherine Oakman et al.   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Proteomic Analysis of Hydrogen Photoproduction in Sulfur-DeprivedChlamydomonasCells

(2010) Mei Chen et al.   JOURNAL OF PROTEOME RESEARCH

Genetic engineering of fatty acid chain length in Phaeodactylum tricornutum

(2010) Randor Radakovits et al.   METABOLIC ENGINEERING

Characterizing the Anaerobic Response ofChlamydomonas reinhardtiiby Quantitative Proteomics

(2010) Mia Terashima et al.   MOLECULAR & CELLULAR PROTEOMICS

Targeted proteomics for Chlamydomonas reinhardtii combined with rapid subcellular protein fractionation, metabolomics and metabolic flux analyses

(2010) Stefanie Wienkoop et al.   Molecular BioSystems

Phylogenomic analysis of the Chlamydomonas genome unmasks proteins potentially involved in photosynthetic function and regulation

(2010) Arthur R. Grossman et al.   PHOTOSYNTHESIS RESEARCH

TheChlorella variabilisNC64A Genome Reveals Adaptation to Photosymbiosis, Coevolution with Viruses, and Cryptic Sex

(2010) Guillaume Blanc et al.   PLANT CELL

RNA-Seq Analysis of Sulfur-DeprivedChlamydomonasCells Reveals Aspects of Acclimation Critical for Cell Survival

(2010) David González-Ballester et al.   PLANT CELL

Identification and Regulation of Plasma Membrane Sulfate Transporters in Chlamydomonas

(2010) W. Pootakham et al.   PLANT PHYSIOLOGY

Changes in Transcript Abundance in Chlamydomonas reinhardtii following Nitrogen Deprivation Predict Diversion of Metabolism

(2010) R. Miller et al.   PLANT PHYSIOLOGY

Anti-Inflammatory Plant Natural Products for Cancer Therapy

(2010) Kandan Aravindaram et al.   PLANTA MEDICA

Proteomic analysis of the response of an acidophilic strain of Chlamydomonas sp. (Chlorophyta) to natural metal-rich water

(2010) Cristina Cid et al.   PROTEOMICS

Microbial Biosynthesis of Alkanes

(2010) A. Schirmer et al.   SCIENCE

Marine Diatom, Navicula sp. Strain JPCC DA0580 and Marine Green Alga, Chlorella sp. Strain NKG400014 as Potential Sources for Biodiesel Production

(2009) Mitsufumi Matsumoto et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Deciphering diatom biochemical pathways via whole-cell proteomics

(2009) BL Nunn et al.   AQUATIC MICROBIAL ECOLOGY

Omics in algae: Paving the way for a systems biological understanding of algal stress phenomena?

(2009) An Jamers et al.   AQUATIC TOXICOLOGY

Proteomic analysis and identification of copper stress-regulated proteins in the marine alga Scytosiphon gracilis (Phaeophyceae)

(2009) Loretto Contreras et al.   AQUATIC TOXICOLOGY

Proteomics of proteins associated with astaxanthin accumulation in the green algae Haematococcus lacustris under the influence of sodium orthovanadate

(2009) Ngoc-Phuong Tran et al.   BIOTECHNOLOGY LETTERS

Proteomic analysis of chromate-induced modifications in Pseudokirchneriella subcapitata

(2009) Candida Vannini et al.   CHEMOSPHERE

Technical advances in proteomics mass spectrometry: identification of post-translational modifications

(2009) Angela Amoresano et al.   CLINICAL CHEMISTRY AND LABORATORY MEDICINE

Growing trend of CE at the omics level: The frontier of systems biology

(2009) Eulsik Oh et al.   ELECTROPHORESIS

Analysis of Flagellar Phosphoproteins fromChlamydomonas reinhardtii

(2009) Jens Boesger et al.   EUKARYOTIC CELL

RNA Interference Silencing of a Major Lipid Droplet Protein Affects Lipid Droplet Size inChlamydomonas reinhardtii

(2009) Eric R. Moellering et al.   EUKARYOTIC CELL

Flexibility in Anaerobic Metabolism as Revealed in a Mutant ofChlamydomonas reinhardtiiLacking Hydrogenase Activity

(2009) Alexandra Dubini et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Phenotypic diversity of hydrogen production in chlorophycean algae reflects distinct anaerobic metabolisms

(2009) Jonathan E. Meuser et al.   JOURNAL OF BIOTECHNOLOGY

Assessment of sampling strategies for gas chromatography–mass spectrometry (GC–MS) based metabolomics of cyanobacteria

(2009) Leonard Krall et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Identification of the proteomic changes in Synechocystis sp. PCC 6803 following prolonged UV-B irradiation

(2009) Yang Gao et al.   JOURNAL OF EXPERIMENTAL BOTANY

Stable Isotope Labeling and Label-Free Proteomics ofDrosophila parkinNull Mutants

(2009) Zhiyin Xun et al.   JOURNAL OF PROTEOME RESEARCH

Proteomic Analysis of Plasma Membranes of CyanobacteriumSynechocystissp. Strain PCC 6803 in Response to High pH Stress

(2009) Li-Fang Zhang et al.   JOURNAL OF PROTEOME RESEARCH

Isotope dilution strategies for absolute quantitative proteomics

(2009) Virginie Brun et al.   Journal of Proteomics

Capillary electrophoresis applied to proteomic analysis

(2009) Bryan R. Fonslow et al.   JOURNAL OF SEPARATION SCIENCE

Anchoring metabolic changes to phenotypic effects in the chlorophyte Scenedesmus vacuolatus under chemical exposure

(2009) Frédéric Sans-Piché et al.   MARINE ENVIRONMENTAL RESEARCH

Integrating multiple 'omics' analysis for microbial biology: application and methodologies

(2009) W. Zhang et al.   MICROBIOLOGY-SGM

Isolation and proteomic analysis of the halotolerant alga Dunaliella salina flagella using shotgun strategy

(2009) Yanlong Jia et al.   MOLECULAR BIOLOGY REPORTS

Direct RNA sequencing

(2009) Fatih Ozsolak et al.   NATURE

An ancient light-harvesting protein is critical for the regulation of algal photosynthesis

(2009) Graham Peers et al.   NATURE

Microarrays and high-throughput transcriptomic analysis in species with incomplete availability of genomic sequences

(2009) Lorraine Pariset et al.   New Biotechnology

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata

(2009) Konstantinos Liolios et al.   NUCLEIC ACIDS RESEARCH

Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas

(2009) A. Z. Worden et al.   SCIENCE

Microscale LC-MS-NMR Platform Applied to the Identification of Active Cyanobacterial Metabolites

(2008) Yiqing Lin et al.   ANALYTICAL CHEMISTRY

Application of Functional Genomics to Pathway Optimization for Increased Isoprenoid Production

(2008) L. Kizer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Biomass Productivities in Wild Type and Pigment Mutant of Cyclotella sp. (Diatom)

(2008) Michael H. Huesemann et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

A Complex Containing PGRL1 and PGR5 Is Involved in the Switch between Linear and Cyclic Electron Flow in Arabidopsis

(2008) Giovanni DalCorso et al.   CELL

Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis

(2008) Ryan Lister et al.   CELL

Aquatic phototrophs: efficient alternatives to land-based crops for biofuels

(2008) G Charles Dismukes et al.   CURRENT OPINION IN BIOTECHNOLOGY

Transcriptome for Photobiological Hydrogen Production Induced by Sulfur Deprivation in the Green AlgaChlamydomonas reinhardtii

(2008) Anh Vu Nguyen et al.   EUKARYOTIC CELL

Proteome analysis at the subcellular level of the cyanobacteriumSpirulina platensisin response to low-temperature stress conditions

(2008) Apiradee Hongsthong et al.   FEMS MICROBIOLOGY LETTERS

A combined stress response analysis of Spirulina platensis in terms of global differentially expressed proteins, and mRNA levels and stability of fatty acid biosynthesis genes

(2008) Wattana Jeamton et al.   FEMS MICROBIOLOGY LETTERS

Metabolomics- and Proteomics-Assisted Genome Annotation and Analysis of the Draft Metabolic Network of Chlamydomonas reinhardtii

(2008) P. May et al.   GENETICS

Quorum sensing in Cyanobacteria: N-octanoyl-homoserine lactone release and response, by the epilithic colonial cyanobacterium Gloeothece PCC6909

(2008) Dilara I Sharif et al.   ISME Journal

Quantitative Shotgun Proteomics of Enriched Heterocysts fromNostocsp. PCC 7120 Using 8-Plex Isobaric Peptide Tags

(2008) Saw Yen Ow et al.   JOURNAL OF PROTEOME RESEARCH

Cloning and characterization of a gene involved in triacylglycerol biosynthesis and identification of additional homologous genes in the oleaginous bacterium Rhodococcus opacus PD630

(2008) A. F. Alvarez et al.   MICROBIOLOGY-SGM

The Phaeodactylum genome reveals the evolutionary history of diatom genomes

(2008) Chris Bowler et al.   NATURE

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

Heat Pretreatment Alleviates UV-B Toxicity in the CyanobacteriumAnabaena doliolum: A Proteomic Analysis of Cross Tolerance

(2008) Yogesh Mishra et al.   PHOTOCHEMISTRY AND PHOTOBIOLOGY

Characterization of a sub-family of Arabidopsis genes with the SPX domain reveals their diverse functions in plant tolerance to phosphorus starvation

(2008) Ke Duan et al.   PLANT JOURNAL

Microalgal triacylglycerols as feedstocks for biofuel production: perspectives and advances

(2008) Qiang Hu et al.   PLANT JOURNAL

Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll band light-harvesting complex II degradation during senescence in rice

(2008) Yutaka Sato et al.   PLANT JOURNAL

High quality metabolomic data for Chlamydomonas reinhardtii

(2008) Do Lee et al.   Plant Methods

Microbial community gene expression in ocean surface waters

(2008) J. Frias-Lopez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Niche adaptation and genome expansion in the chlorophyll d-producing cyanobacterium Acaryochloris marina

(2008) W. D. Swingley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation

(2008) A. E. Allen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

(2008) U. Nagalakshmi et al.   SCIENCE