Data Assimilation Methods for Neuronal State and Parameter Estimation

Assimilation of Biophysical Neuronal Dynamics in Neuromorphic VLSI

(2017) Jun Wang et al.   IEEE Transactions on Biomedical Circuits and Systems

An Introduction to Trajectory Optimization: How to Do Your Own Direct Collocation

(2017) Matthew Kelly   SIAM REVIEW

Robustness of Solutions of the Inverse Problem for Linear Dynamical Systems with Uncertain Data

(2017) S. Stanhope et al.   SIAM-ASA Journal on Uncertainty Quantification

Nonlinear statistical data assimilation for HVC $$_{\mathrm{RA}}$$ RA neurons in the avian song system

(2016) Nirag Kadakia et al.   BIOLOGICAL CYBERNETICS

Reconstructing three-dimensional reentrant cardiac electrical wave dynamics using data assimilation

(2016) M. J. Hoffman et al.   CHAOS

Dynamic compensation mechanism gives rise to period and duty-cycle level sets in oscillatory neuronal models

(2016) Horacio G. Rotstein et al.   JOURNAL OF NEUROPHYSIOLOGY

Parameter identifiability and identifiable combinations in generalized Hodgkin–Huxley models

(2016) Olivia J. Walch et al.   NEUROCOMPUTING

The quiet revolution of numerical weather prediction

(2015) Peter Bauer et al.   NATURE

Systematic variational method for statistical nonlinear state and parameter estimation

(2015) Jingxin Ye et al.   PHYSICAL REVIEW E

Estimation in the partially observed stochastic Morris–Lecar neuronal model with particle filter and stochastic approximation methods

(2014) Susanne Ditlevsen et al.   Annals of Applied Statistics

Estimating parameters and predicting membrane voltages with conductance-based neuron models

(2014) C. Daniel Meliza et al.   BIOLOGICAL CYBERNETICS

Automatic parameter estimation of multicompartmental neuron models via minimization of trace error with control adjustment

(2014) Ted Brookings et al.   JOURNAL OF NEUROPHYSIOLOGY

Joint estimation of states and parameters of Hodgkin–Huxley neuronal model using Kalman filtering

(2014) M. Lankarany et al.   NEUROCOMPUTING

A Unified Approach to Linking Experimental, Statistical and Computational Analysis of Spike Train Data

(2014) Liang Meng et al.   PLoS One

Identifiability of Linear and Linear-in-Parameters Dynamical Systems from a Single Trajectory

(2014) S. Stanhope et al.   SIAM JOURNAL ON APPLIED DYNAMICAL SYSTEMS

Real-time tracking of neuronal network structure using data assimilation

(2013) Franz Hamilton et al.   PHYSICAL REVIEW E

Adaptive ensemble Kalman filtering of non-linear systems

(2013) Tyrus Berry et al.   TELLUS SERIES A-DYNAMIC METEOROLOGY AND OCEANOGRAPHY

Dynamical estimation of neuron and network properties II: path integral Monte Carlo methods

(2012) Mark Kostuk et al.   BIOLOGICAL CYBERNETICS

A practical approach to parameter estimation applied to model predicting heart rate regulation

(2012) Mette S. Olufsen et al.   JOURNAL OF MATHEMATICAL BIOLOGY

Reconstructing Mammalian Sleep Dynamics with Data Assimilation

(2012) Madineh Sedigh-Sarvestani et al.   PLoS Computational Biology

Dynamical estimation of neuron and network properties I: variational methods

(2011) Bryan A. Toth et al.   BIOLOGICAL CYBERNETICS

Efficient fitting of conductance-based model neurons from somatic current clamp

(2011) Nathan F. Lepora et al.   JOURNAL OF COMPUTATIONAL NEUROSCIENCE

Assimilating Seizure Dynamics

(2010) Ghanim Ullah et al.   PLoS Computational Biology

Automatic fitting of spiking neuron models to electrophysiological recordings

(2010) Cyrille Rossant   Frontiers in Neuroinformatics

The ensemble Kalman filter for combined state and parameter estimation

(2009)   IEEE CONTROL SYSTEMS MAGAZINE

Dynamical State and Parameter Estimation

(2009) Henry D. I. Abarbanel et al.   SIAM JOURNAL ON APPLIED DYNAMICAL SYSTEMS

Smoothing of, and Parameter Estimation from, Noisy Biophysical Recordings

(2009) Quentin J. M. Huys et al.   PLoS Computational Biology

Data assimilation methods in the Earth sciences

(2008) Rolf H. Reichle   ADVANCES IN WATER RESOURCES

Automated neuron model optimization techniques: a review

(2008) W. Van Geit et al.   BIOLOGICAL CYBERNETICS

A Reanalysis of Ocean Climate Using Simple Ocean Data Assimilation (SODA)

(2008) James A. Carton et al.   MONTHLY WEATHER REVIEW