Imputation and quality control steps for combining multiple genome-wide datasets

Controlling for population structure and genotyping platform bias in the eMERGE multi-institutional biobank linked to electronic health records

(2015) David R. Crosslin et al.   Frontiers in Genetics

Opportunities for genomic clinical decision support interventions

(2013) Casey Lynnette Overby et al.   GENETICS IN MEDICINE

The Electronic Medical Records and Genomics (eMERGE) Network: past, present and future

(2013) Omri Gottesman et al.   GENETICS IN MEDICINE

Imputation-Based Genomic Coverage Assessments of Current Human Genotyping Arrays

(2013) Sarah C. Nelson et al.   G3-Genes Genomes Genetics

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

Adjustment for Population Stratification via Principal Components in Association Analysis of Rare Variants

(2012) Yiwei Zhang et al.   GENETIC EPIDEMIOLOGY

An integrated map of genetic variation from 1,092 human genomes

(2012)   NATURE

Fast and accurate genotype imputation in genome-wide association studies through pre-phasing

(2012) Bryan Howie et al.   NATURE GENETICS

Improved whole-chromosome phasing for disease and population genetic studies

(2012) Olivier Delaneau et al.   NATURE METHODS

Assessment of Genotype Imputation Performance Using 1000 Genomes in African American Studies

(2012) Dana B. Hancock et al.   PLoS One

Is ‘forward’ the same as ‘plus’?…and other adventures in SNP allele nomenclature

(2012) Sarah C. Nelson et al.   TRENDS IN GENETICS

The Metabochip, a Custom Genotyping Array for Genetic Studies of Metabolic, Cardiovascular, and Anthropometric Traits

(2012) Benjamin F. Voight et al.   PLoS Genetics

The eMERGE Network: A consortium of biorepositories linked to electronic medical records data for conducting genomic studies

(2011) Catherine A McCarty et al.   BMC Medical Genomics

The effect of genome-wide association scan quality control on imputation outcome for common variants

(2011) Lorraine Southam et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Imputation of low-frequency variants using the HapMap3 benefits from large, diverse reference sets

(2011) Luke Jostins et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

Pitfalls of merging GWAS data: lessons learned in the eMERGE network and quality control procedures to maintain high data quality

(2011) Rebecca L. Zuvich et al.   GENETIC EPIDEMIOLOGY

Genotype Imputation with Thousands of Genomes

(2011) Bryan Howie et al.   G3-Genes Genomes Genetics

Robust relationship inference in genome-wide association studies

(2010) Ani Manichaikul et al.   BIOINFORMATICS

ProbABEL package for genome-wide association analysis of imputed data

(2010) Yurii S Aulchenko et al.   BMC BIOINFORMATICS

MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes

(2010) Yun Li et al.   GENETIC EPIDEMIOLOGY

Quantification of Population Structure Using Correlated SNPs by Shrinkage Principal Components

(2010) Fei Zou et al.   HUMAN HEREDITY

Integrating common and rare genetic variation in diverse human populations

(2010)   NATURE

A New Statistic to Evaluate Imputation Reliability

(2010) Peng Lin et al.   PLoS One

A Unified Approach to Genotype Imputation and Haplotype-Phase Inference for Large Data Sets of Trios and Unrelated Individuals

(2009) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genotype Imputation

(2009) Yun Li et al.   Annual Review of Genomics and Human Genetics

A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies

(2009) Bryan N. Howie et al.   PLoS Genetics

Missing data imputation and haplotype phase inference for genome-wide association studies

(2008) Sharon R. Browning   HUMAN GENETICS

A comprehensive evaluation of SNP genotype imputation

(2008) Michael Nothnagel et al.   HUMAN GENETICS

Interpreting principal component analyses of spatial population genetic variation

(2008) John Novembre et al.   NATURE GENETICS

Analyses and Comparison of Accuracy of Different Genotype Imputation Methods

(2008) Yu-Fang Pei et al.   PLoS One

Practical Issues in Imputation-Based Association Mapping

(2008) Yongtao Guan et al.   PLoS Genetics