An introductory review of parallel independent component analysis (p-ICA) and a guide to applying p-ICA to genetic data and imaging phenotypes to identify disease-associated biological pathways and systems in common complex disorders

Sparse models for correlative and integrative analysis of imaging and genetic data

(2014) Dongdong Lin et al.   JOURNAL OF NEUROSCIENCE METHODS

A three-way parallel ICA approach to analyze links among genetics, brain structure and brain function

(2014) Victor M. Vergara et al.   NEUROIMAGE

Dynamic changes of spatial functional network connectivity in healthy individuals and schizophrenia patients using independent vector analysis

(2014) Sai Ma et al.   NEUROIMAGE

Sparse representation based biomarker selection for schizophrenia with integrated analysis of fMRI and SNPs

(2014) Hongbao Cao et al.   NEUROIMAGE

Multivariate analysis reveals genetic associations of the resting default mode network in psychotic bipolar disorder and schizophrenia

(2014) S. A. Meda et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bipolar and Schizophrenia Network for Intermediate Phenotypes: Outcomes Across the Psychosis Continuum

(2014) C. A. Tamminga et al.   SCHIZOPHRENIA BULLETIN

A review of multivariate analyses in imaging genetics

(2014) Jingyu Liu et al.   Frontiers in Neuroinformatics

Dynamic functional connectivity analysis reveals transient states of dysconnectivity in schizophrenia

(2014) E. Damaraju et al.   NeuroImage-Clinical

Analytical strategies for large imaging genetic datasets: experiences from the IMAGEN study

(2013) Charlotte Nymberg et al.   Annals of the New York Academy of Sciences

Brain Connectivity Networks in Schizophrenia Underlying Resting State Functional Magnetic Resonance Imaging

(2013) Qingbao Yu et al.   CURRENT TOPICS IN MEDICINAL CHEMISTRY

Correspondence between fMRI and SNP data by group sparse canonical correlation analysis

(2013) Dongdong Lin et al.   MEDICAL IMAGE ANALYSIS

Genetic relationship between five psychiatric disorders estimated from genome-wide SNPs

(2013) S Hong Lee et al.   NATURE GENETICS

Genome-wide association analysis identifies 13 new risk loci for schizophrenia

(2013) Stephan Ripke et al.   NATURE GENETICS

Dynamic functional connectivity: Promise, issues, and interpretations

(2013) R. Matthew Hutchison et al.   NEUROIMAGE

Guided exploration of genomic risk for gray matter abnormalities in schizophrenia using parallel independent component analysis with reference

(2013) Jiayu Chen et al.   NEUROIMAGE

Alzheimer’s Disease: Analyzing the Missing Heritability

(2013) Perry G. Ridge et al.   PLoS One

Methylation Patterns in Whole Blood Correlate With Symptoms in Schizophrenia Patients

(2013) Jingyu Liu et al.   SCHIZOPHRENIA BULLETIN

Discovery and replication of gene influences on brain structure using LASSO regression

(2013) Omid Kohannim   Frontiers in Neuroscience

Presence of Multiple Independent Effects in Risk Loci of Common Complex Human Diseases

(2012) Xiayi Ke   AMERICAN JOURNAL OF HUMAN GENETICS

Tracking Whole-Brain Connectivity Dynamics in the Resting State

(2012) Elena A. Allen et al.   CEREBRAL CORTEX

Endophenotypes, Dimensions, Risks: Is Psychosis Analogous to Common Inherited Medical Illnesses?

(2012) Godfrey D. Pearlson et al.   CLINICAL EEG AND NEUROSCIENCE

A framework for interpreting functional networks in schizophrenia

(2012) Peter C. Williamson et al.   Frontiers in Human Neuroscience

An ICA with reference approach in identification of genetic variation and associated brain networks

(2012) Jingyu Liu et al.   Frontiers in Human Neuroscience

Activation of specific interneurons improves V1 feature selectivity and visual perception

(2012) Seung-Hee Lee et al.   NATURE

Puzzling over schizophrenia: Schizophrenia as a pathway disease

(2012) Patrick F Sullivan   NATURE MEDICINE

A large scale multivariate parallel ICA method reveals novel imaging–genetic relationships for Alzheimer's disease in the ADNI cohort

(2012) Shashwath A. Meda et al.   NEUROIMAGE

Significant correlation between a set of genetic polymorphisms and a functional brain network revealed by feature selection and sparse Partial Least Squares

(2012) Édith Le Floch et al.   NEUROIMAGE

Periodic changes in fMRI connectivity

(2012) Daniel A. Handwerker et al.   NEUROIMAGE

Resting state fMRI: A personal history

(2012) Bharat B. Biswal   NEUROIMAGE

Multifaceted genomic risk for brain function in schizophrenia

(2012) Jiayu Chen et al.   NEUROIMAGE

Principal Components Analysis of Population Admixture

(2012) Jianzhong Ma et al.   PLoS One

Gene Size Matters

(2012) Alexandra Mirina et al.   PLoS One

Extracting Intrinsic Functional Networks with Feature-Based Group Independent Component Analysis

(2012) Vince D. Calhoun et al.   PSYCHOMETRIKA

Genetic association study of the P300 endophenotype in schizophrenia

(2012) Jeroen Decoster et al.   SCHIZOPHRENIA RESEARCH

Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges

(2012) Purvesh Khatri et al.   PLoS Computational Biology

A bias-reducing pathway enrichment analysis of genome-wide association data confirmed association of the MHC region with schizophrenia

(2011) Peilin Jia et al.   JOURNAL OF MEDICAL GENETICS

Evidence-based psychiatric genetics, AKA the false dichotomy between common and rare variant hypotheses

(2011) P M Visscher et al.   MOLECULAR PSYCHIATRY

Altered Topological Properties of Functional Network Connectivity in Schizophrenia during Resting State: A Small-World Brain Network Study

(2011) Qingbao Yu et al.   PLoS One

Suggestion of Roles for Both Common and Rare Risk Variants in Genome-wide Studies of Schizophrenia

(2010) Michael J. Owen et al.   ARCHIVES OF GENERAL PSYCHIATRY

Pathway analysis software: Annotation errors and solutions

(2010) Nicole K. Henderson-MacLennan et al.   MOLECULAR GENETICS AND METABOLISM

Data quality control in genetic case-control association studies

(2010) Carl A Anderson et al.   Nature Protocols

Discovering genetic associations with high-dimensional neuroimaging phenotypes: A sparse reduced-rank regression approach

(2010) Maria Vounou et al.   NEUROIMAGE

A Study of the Influence of Sex on Genome Wide Methylation

(2010) Jingyu Liu et al.   PLoS One

Toward New Approaches to Psychotic Disorders: The NIMH Research Domain Criteria Project

(2010) B. N. Cuthbert et al.   SCHIZOPHRENIA BULLETIN

Common vs. rare allele hypotheses for complex diseases

(2009) Nicholas J Schork et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Functional brain networks in schizophrenia: a review

(2009) Vince D. Calhoun   Frontiers in Human Neuroscience

Genetics of psychosis; insights from views across the genome

(2009) Michael C. O’Donovan et al.   HUMAN GENETICS

Feature-Based Fusion of Medical Imaging Data

(2009) Vince D. Calhoun et al.   IEEE TRANSACTIONS ON INFORMATION TECHNOLOGY IN BIOMEDICINE

Common polygenic variation contributes to risk of schizophrenia and bipolar disorder

(2009) Shaun M. Purcell et al.   NATURE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Human genetic variation and its contribution to complex traits

(2009) Kelly A. Frazer et al.   NATURE REVIEWS GENETICS

Genetic determinants of target and novelty-related event-related potentials in the auditory oddball response

(2009) Jingyu Liu et al.   NEUROIMAGE

Elucidating the genetic architecture of familial schizophrenia using rare copy number variant and linkage scans

(2009) B. Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Narrowing the Boundaries of the Genetic Architecture of Schizophrenia

(2009) N. R. Wray et al.   SCHIZOPHRENIA BULLETIN

A Parallel Independent Component Analysis Approach to Investigate Genomic Influence on Brain Function

(2008) Jingyu Liu et al.   IEEE SIGNAL PROCESSING LETTERS

1000 Genomes Project Promises Closer Look at Variation in Human Genome

(2008) Bridget M. Kuehn   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

A review of group ICA for fMRI data and ICA for joint inference of imaging, genetic, and ERP data

(2008) Vince D. Calhoun et al.   NEUROIMAGE

Correlation-based multivariate analysis of genetic influence on brain volume

(2008) David R. Hardoon et al.   NEUROSCIENCE LETTERS

Combining fMRI and SNP data to investigate connections between brain function and genetics using parallel ICA

(2007) Jingyu Liu et al.   HUMAN BRAIN MAPPING