4.7 Article

Biogeographical note on Antarctic microflorae: Endemism and cosmopolitanism

Journal

GEOSCIENCE FRONTIERS
Volume 4, Issue 6, Pages 633-646

Publisher

CHINA UNIV GEOSCIENCES, BEIJING
DOI: 10.1016/j.gsf.2012.11.002

Keywords

-

Funding

  1. Grants-in-Aid for Scientific Research [23570117, 11J30005] Funding Source: KAKEN

Ask authors/readers for more resources

This study deals with the biogeography of Antarctic microflora (Antarctica acts as best model to study microbial biogeography) such as cyanobacteria and selected halophiles with special emphasis on Halomonas variabilis and Bacillus licheniformis. Halophiles are known to be resistant not only to salt stress, but also to extreme temperature, pressure, and aridity and they are capable of surviving in harsh environments such as polar regions, deep-sea habitats, and deserts. Many microbes are known to be resistant to hostile environmental conditions, and are capable of surviving in harsh environments. Our group has isolated 444 strains belonging to 28 genera of halophiles from various environments around the world. The 16S rRNA gene sequences revealed that many of the isolated strains from geographically distant habitats having different environmental conditions, were closely related to each other, with some strains possessing 100% identical sequences. Organisms possessing survival mechanism such as spore formation are usually ubiquitous. The genus Halomonas is represented by potentially endemic strains and the ubiquitous H. variabilis, while spore-forming B. licheniformis showed cosmopolitan distribution. One potentially endemic (moderate endemicity that is regional and/or continental distribution) strain was reported from Syowa station, East Antarctica, and Mario Zucchelli station, West Antarctica, which are geographically separated by 3000 km. Moreover, 15 strains having 100% similarity with B. licheniformis were considered cosmopolitans. The results of this work provide support for the middle-ground model that some microbes have moderate endemicity and others have cosmopolitan distribution. These results will contribute to a greater understanding of microbial biogeography with special emphasis on Antarctica. (C) 2012, China University of Geosciences (Beijing) and Peking University. Production and hosting by Elsevier B.V. All rights reserved.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.7
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Geochemistry & Geophysics

The origin of methane in serpentinite-hosted hyperalkaline hot spring at Hakuba Happo, Japan: Radiocarbon, methane isotopologue and noble gas isotope approaches

Konomi Suda, Takahiro Aze, Yosuke Miyairi, Yusuke Yokoyama, Yohei Matsui, Hisahiro Ueda, Takuya Saito, Tomohiko Sato, Yusuke Sawaki, Ryosuke Nakai, Hideyuki Tamaki, Hiroshi A. Takahashi, Noritoshi Morikawa, Shuhei Ono

Summary: This study investigates the methane generation processes and carbon source in the Hakuba Happo geothermal wells in Japan. The results reveal that methane associated with serpentinization is mainly derived from 13C-depleted fossil carbon sources and serpentinization-derived H2 at high temperatures, and is subsequently entrained into the cooler circulating meteoric water system.

EARTH AND PLANETARY SCIENCE LETTERS (2022)

Article Microbiology

Isolation of Aquatic Plant Growth-Promoting Bacteria for the Floating Plant Duckweed (Lemna minor)

Ayaka Makino, Ryosuke Nakai, Yasuko Yoneda, Tadashi Toyama, Yasuhiro Tanaka, Xian-Ying Meng, Kazuhiro Mori, Michihiko Ike, Masaaki Morikawa, Yoichi Kamagata, Hideyuki Tamaki

Summary: This study identified four novel aquatic plant growth-promoting bacteria (PGPB) strains, named MRB1-4, from Lythrum anceps, which exhibited beneficial growth effects on duckweed Lemna minor. These strains produced indole-3-acetic acid and possessed similar plant growth-promoting traits as terrestrial PGPB. Phylogenetic analysis revealed that MRB-1, -3, and -4 were affiliated with known proteobacterial genera, while MRB2 was a potentially novel strain at the genus level. Furthermore, MRB3, a Pelomonas strain, was found to be epiphytic and adhered to the roots and fronds of duckweed.

MICROORGANISMS (2022)

Article Microbiology

Phylotypic Diversity of Bacteria Associated with Speleothems of a Silicate Cave in a Guiana Shield Tepui

Qi Liu, Zichen He, Takeshi Naganuma, Ryosuke Nakai, Luz Maria Rodriguez, Rafael Carreno, Franco Urbani

Summary: This study investigated the microbial diversity of opal speleothems from a silicate cave in Guiana Highlands and found that the microbial composition in silicate caves is similar to that in limestone and other silicate caves. Additionally, the study inferred metabolic features and found that membrane transport and amino acid metabolism may play important roles in the formation and weathering of silicate speleothems.

MICROORGANISMS (2022)

Article Microbiology

Microbiomic Analysis of Bacteria Associated with Rock Tripe Lichens in Continental and Maritime Antarctic Regions

Zichen He, Takeshi Naganuma, Ryosuke Nakai, Satoshi Imura, Megumu Tsujimoto, Peter Convey

Summary: This study compared the bacterial floras and potential metabolism of rock tripe lichens from two distinct Antarctic biological regions. The results showed clear differences in bacterial communities between the two regions and suggested that the sampling area's climate may influence the metabolism of the lichen-associated bacteria.

JOURNAL OF FUNGI (2022)

Article Ecology

Unique H2-utilizing lithotrophy in serpentinite-hosted systems

Masaru Konishi Nobu, Ryosuke Nakai, Satoshi Tamazawa, Hiroshi Mori, Atsushi Toyoda, Akira Ijiri, Shino Suzuki, Ken Kurokawa, Yoichi Kamagata, Hideyuki Tamaki

Summary: The serpentinization of ultramafic rocks can provide molecular hydrogen (H-2) for microorganisms, but the conditions in these environments are extremely challenging. Through metagenomics and thermodynamics, researchers have discovered unique microbial taxa in serpentinization-active systems that are adapted to these conditions. These microorganisms utilize alternative modes of H-2-utilizing lithotrophy, specifically using reduced carbon compounds rather than CO2. This research sheds light on potential strategies that extremophiles may employ in serpentinization-associated environments, which could also be relevant to primordial lithotrophy on early Earth.

ISME JOURNAL (2023)

Article Microbiology

Symbiosis between Candidatus Patescibacteria and Archaea Discovered in Wastewater-Treating Bioreactors

Kyohei Kuroda, Kyosuke Yamamoto, Ryosuke Nakai, Yuga Hirakata, Kengo Kubota, Masaru K. Nobu, Takashi Narihiro

Summary: Ca. Patescibacteria is a highly diverse group of bacteria that has symbiotic or parasitic relationships with other bacteria or even eukarya. By amending wastewater treatment sludge samples, researchers discovered a novel cross-domain parasitic interaction between Ca. Patescibacteria and an isolate archaeon closely related to a methanogen population. This finding sheds light on the potential strategies for culturing Ca. Patescibacteria and highlights the importance of cross-domain symbiosis.
Review Microbiology

Chronicle of Research into Lichen-Associated Bacteria

Zichen He, Takeshi Naganuma

Summary: Lichens are symbiotic systems consisting of fungal and algal symbionts. The plasticity in the combination of fungal and algal species contributes to the worldwide distribution of lichens, while the association between non-cyanobacterial bacteria and lichens has attracted attention.

MICROORGANISMS (2022)

Article Microbiology

Accelerated Bioconversion of Chemically Solubilized Lignite Solution to Methane by Methanogenic Consortium: Experimental Results and Their Application to the Subsurface Cultivation and Gasification Method

Akio Ueno, Satoshi Tamazawa, Shuji Tamamura, Takuma Murakami, Tamotsu Kiyama, Hidenori Inomata, Noritaka Aramaki, Kunihiko Yoshida, Shinji Yamaguchi, Hideo Aoyama, Takeshi Naganuma, Toshifumi Igarashi

Summary: This study reported the effective conversion of chemically solubilized lignite into methane using methanogenic consortia. Adding pulverized lignite as conductive material significantly increased methane production by approximately 50-fold. This method provides an effective utilization of the neglected subterranean lignite resource.

MICROORGANISMS (2022)

Article Microbiology

Whole-Genome Sequences of Three Psychrotolerant Mycolicibacterium sp. Strains Isolated from Antarctic Soil

Sho Shimada, Kotaro Aoki, Ryosuke Nakai, Shota Miura, Kohji Komori, Sakae Kudoh, Satoshi Imura, Yoshikazu Ishii, Kazuhiro Tateda

Summary: We report the whole-genome sequences of three psychrotolerant Mycolicibacterium strains, TUM20983, TUM20984, and TUM20985, isolated from Antarctic soils. Taxonomic analyses indicate that these strains are putative new species. These genome sequences may provide insight into the cold adaptation mechanisms of Mycolicibacterium spp. through future comparative genomic studies.

MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2023)

Article Microbiology

Complete Genome Sequence of Polynucleobacter sp. Strain TUM22923, Isolated from Antarctic Lake Sediment

Sho Shimada, Ryosuke Nakai, Kotaro Aoki, Shota Miura, Kohji Komori, Sakae Kudoh, Satoshi Imura, Yoshikazu Ishii, Kazuhiro Tateda

Summary: In this study, the complete genome sequence of Polynucleobacter sp. strain TUM22923, isolated from Antarctic lake sediment, was reported. The genome of this strain is 1,860,127 bp in length, consisting of 1,848 protein-coding sequences. These data provide insights into the genome streamlining and low-temperature adaptation mechanisms in members of the cosmopolitan group of ultramicrobacteria, Polynucleobacter.

MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2023)

Article Environmental Sciences

Comparative valuation of the chlorpyrifos, acetamiprid, and lambda-cyhalothrin toxicity and their hematological and histopathological consequences in pigeons

Shumaila Noreen, Ibrar Muhammad Khan, Muhammad Shehzad Khan, Bibi Zarnaab, Iram Gul, Muhammad Zahoor Khan, Waqar Azeem Jadoon, Shehzad Ghayyur, Yong Liu

Summary: This study compared the acute toxic effects of pesticides on pigeon health. The results showed significant changes in blood cell indicators and observed organ damage in pigeons exposed to pesticides. This indicates that the uncontrolled use of pesticides impairs ecosystems and poses a substantial health risk to wildlife and humans.

ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH (2023)

Article Biotechnology & Applied Microbiology

Diversity of Candidatus Patescibacteria in Activated Sludge Revealed by a Size-Fractionation Approach

Shuka Kagemasa, Kyohei Kuroda, Ryosuke Nakai, Yu-You Li, Kengo Kubota

Summary: This study reveals a higher diversity of Ca. Patescibacteria in activated sludge than previously expected through genetic analysis.

MICROBES AND ENVIRONMENTS (2022)

Article Biotechnology & Applied Microbiology

Novel Cross-domain Symbiosis between Candidatus Patescibacteria and Hydrogenotrophic Methanogenic Archaea Methanospirillum Discovered in a Methanogenic Ecosystem

Kyohei Kuroda, Kengo Kubota, Shuka Kagemasa, Ryosuke Nakai, Yuga Hirakata, Kyosuke Yamamoto, Masaru K. Nobu, Takashi Narihiro

Summary: This study identified a previously unseen symbiosis between Ca. Patescibacteria and Archaea by using fluorescence in situ hybridization and transmission electron microscopy. The 32-520/UBA5633 cells were found to specifically adhere to Methanospirillum, and the metagenome-assembled genomes of these cells encoded unique gene clusters.

MICROBES AND ENVIRONMENTS (2022)

Article Geosciences, Multidisciplinary

The Early-Middle Triassic Supervolcano in the Yangtze Block, South China and associated obstacles to biotic recovery

Haifeng Chen, Hao Zou, M. Santosh, Huawen Cao, Franco Pirajno, Changcheng Huang, Mingcai Hou

Summary: Researchers have identified a supervolcano eruption event in the tuff layers from the Early-Middle Triassic boundary in the Yangtze Block. This eruption may have contributed to the delayed biotic recovery after the end-Permian mass extinction.

GEOSCIENCE FRONTIERS (2024)

Article Geosciences, Multidisciplinary

Fe-Mn interdiffusion in aluminosilicate garnets

Yanjuan Yin, Baohua Zhang, Xinzhuan Guo

Summary: This study determines the Fe-Mn interdiffusion rates in natural Mn-bearing garnet crystals with 750 ppm H2O using an experimental approach. The results show that the Fe-Mn interdiffusion coefficient slightly decreases with increasing Fe content, and water significantly enhances the Fe-Mn interdiffusion in garnet. These findings suggest that the time required for homogenization of the compositional zoning of a garnet is much shorter than previously thought.

GEOSCIENCE FRONTIERS (2024)

Article Geosciences, Multidisciplinary

Paleozoic tectonic evolution of the proto-Korean Peninsula along the East Asian continental margin from detrital zircon U-Pb geochronology and Hf isotope geochemistry

Yirang Jang, Sung Won Kim, Vinod O. Samuel, Sanghoon Kwon, Seung-Ik Park, M. Santosh, Keewook Yi

Summary: Detrital zircon geochronology and Hf isotope analysis are used to infer provenance characteristics and evaluate the tectonic evolution of sedimentary basins. The results of this study show that the Paleozoic sequences of the Okcheon Belt have a diverse provenance linked to different tectonic environments.

GEOSCIENCE FRONTIERS (2024)

Article Geosciences, Multidisciplinary

Melting of hydrous pyroxenites with alkali amphiboles in the continental mantle: 2. Trace element compositions of melts and minerals

Stephen F. Foley, Isra S. Ezad

Summary: This study investigates the trace element compositions of melts and minerals from hydrous pyroxenites containing K-richterite through high-pressure experiments. The results show that different minerals play different roles in the enrichment of various trace elements. The study also models the isotopic aging process in hydrous pyroxenite source rocks.

GEOSCIENCE FRONTIERS (2024)

Article Geosciences, Multidisciplinary

Paleo-Mesoarchean sedimentary record in the Dharwar Craton, India: Implications for Archean ocean oxygenation

G. Harshitha, C. Manikyamba, M. Santosh, Cheng-Xue Yang, A. Keshav Krishna, V. V. Sesha Sai, I. Panduranga Reddy

Summary: The early Archean oceans underwent significant redox changes that had a lasting impact on the Earth's biosphere. This study investigates the geochemical characteristics of Archean Mnformations in southern India and reveals the importance of these sedimentary deposits in understanding the ancient redox conditions and sedimentation patterns. The findings suggest that the sediments were deposited in shallow to deeper shelf environments in the Archean proto-ocean, and they provide evidence of regional episodes of ocean oxygenation prior to the Great Oxygenation Event.

GEOSCIENCE FRONTIERS (2024)