PTree: pattern-based, stochastic search for maximum parsimony phylogenies

Long Branch Effects Distort Maximum Likelihood Phylogenies in Simulations Despite Selection of the Correct Model

(2012) Patrick Kück et al.   PLoS One

Faster exact maximum parsimony search with XMP

(2011) W. Timothy J. White et al.   BIOINFORMATICS

Non-hereditary Maximum Parsimony trees

(2011) Mareike Fischer   JOURNAL OF MATHEMATICAL BIOLOGY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

High Performance Phylogenetic Analysis With Maximum Parsimony on Reconfigurable Hardware

(2010) Server Kasap et al.   IEEE TRANSACTIONS ON VERY LARGE SCALE INTEGRATION (VLSI) SYSTEMS

GenBank

(2010) D. A. Benson et al.   NUCLEIC ACIDS RESEARCH

Phylogenetic analysis of 73 060 taxa corroborates major eukaryotic groups

(2009) Pablo A. Goloboff et al.   CLADISTICS

POY version 4: phylogenetic analysis using dynamic homologies

(2009) Andrés Varón et al.   CLADISTICS

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

The Role of Genomics in Tracking the Evolution of Influenza A Virus

(2009) Alice Carolyn McHardy et al.   PLoS Pathogens

TNT, a free program for phylogenetic analysis

(2008) Pablo A. Goloboff et al.   CLADISTICS

Progressive Tree Neighborhood applied to the Maximum Parsimony Problem

(2008) A. Goeffon et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Influenza vaccine strain selection and recent studies on the global migration of seasonal influenza viruses

(2008) Colin A. Russell et al.   VACCINE