Symbiotic prokaryotic communities from different populations of the giant barrel sponge,Xestospongia muta

Characterizing the bacterial associates of three Caribbean sponges along a gradient from shallow to mesophotic depths

(2013) Julie B. Olson et al.   FEMS MICROBIOLOGY ECOLOGY

Nitrogen Biogeochemistry in the Caribbean Sponge, Xestospongia muta: A Source or Sink of Dissolved Inorganic Nitrogen?

(2013) Cara L. Fiore et al.   PLoS One

Diversity, Physiology, and Niche Differentiation of Ammonia-Oxidizing Archaea

(2012) Roland Hatzenpichler   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

‘Sponge-specific’ bacteria are widespread (but rare) in diverse marine environments

(2012) Michael W Taylor et al.   ISME Journal

Functional equivalence and evolutionary convergence in complex communities of microbial sponge symbionts

(2012) L. Fan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sponge-Associated Bacteria Are Strictly Maintained in Two Closely Related but Geographically Distant Sponge Hosts

(2011) Naomi F. Montalvo et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Sponge-specific clusters revisited: a comprehensive phylogeny of sponge-associated microorganisms

(2011) Rachel L. Simister et al.   ENVIRONMENTAL MICROBIOLOGY

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges

(2011) Susanne Schmitt et al.   ISME Journal

Complex interactions between marine sponges and their symbiotic microbial communities

(2011) Christopher J. Freeman et al.   LIMNOLOGY AND OCEANOGRAPHY

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Microbial to reef scale interactions between the reef-building coral Montastraea annularis and benthic algae

(2011) K. L. Barott et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions

(2010) Anke Behnke et al.   ENVIRONMENTAL MICROBIOLOGY

Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea

(2010) On On Lee et al.   ISME Journal

Single-cell genomics reveals the lifestyle of Poribacteria, a candidate phylum symbiotically associated with marine sponges

(2010) Alexander Siegl et al.   ISME Journal

Effects of Sponge Bleaching on Ammonia-Oxidizing Archaea: Distribution and Relative Expression of Ammonia Monooxygenase Genes Associated with the Barrel Sponge Xestospongia muta

(2010) Susanna López-Legentil et al.   MICROBIAL ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Environmental Shaping of Sponge Associated Archaeal Communities

(2010) Aline S. Turque et al.   PLoS One

Nitrogen fixation and nitrogen transformations in marine symbioses

(2010) Cara L. Fiore et al.   TRENDS IN MICROBIOLOGY

Pyrosequencing reveals a contrasted bacterial diversity between oak rhizosphere and surrounding soil

(2010) Stéphane Uroz et al.   Environmental Microbiology Reports

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data

(2009) Micah Hamady et al.   ISME Journal

Ecology of mesophotic coral reefs

(2009) Michael P. Lesser et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Accurate determination of microbial diversity from 454 pyrosequencing data

(2009) Christopher Quince et al.   NATURE METHODS

Molecular Microbial Diversity Survey of Sponge Reproductive Stages and Mechanistic Insights into Vertical Transmission of Microbial Symbionts

(2008) S. Schmitt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Physiology, phylogeny andin situevidence for bacterial and archaeal nitrifiers in the marine spongeAplysina aerophoba

(2008) Kristina Bayer et al.   ENVIRONMENTAL MICROBIOLOGY

Redwood of the reef: growth and age of the giant barrel sponge Xestospongia muta in the Florida Keys

(2008) S. E. McMurray et al.   MARINE BIOLOGY

Nitrification controls on fluxes and isotopic composition of nitrate from Florida Keys sponges

(2007) Melissa W. Southwell et al.   MARINE CHEMISTRY