The role of breast-feeding in infant immune system: a systems perspective on the intestinal microbiome

Where Next for Microbiome Research?

(2015) Matthew K. Waldor et al.   PLOS BIOLOGY

Secretory antibodies in breast milk promote long-term intestinal homeostasis by regulating the gut microbiota and host gene expression

(2014) E. W. Rogier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gut microbiota of healthy Canadian infants: profiles by mode of delivery and infant diet at 4 months

(2013) M. B. Azad et al.   CANADIAN MEDICAL ASSOCIATION JOURNAL

Richness of human gut microbiome correlates with metabolic markers

(2013) Emmanuelle Le Chatelier et al.   NATURE

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

The gut microbiota — masters of host development and physiology

(2013) Felix Sommer et al.   NATURE REVIEWS MICROBIOLOGY

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

Impact of breast-feeding and high- and low-protein formula on the metabolism and growth of infants from overweight and obese mothers

(2013) François-Pierre J. Martin et al.   PEDIATRIC RESEARCH

Development of intestinal microbiota in infants and its impact on health

(2013) Sebastien Matamoros et al.   TRENDS IN MICROBIOLOGY

Mining biomarker information in biomedical literature

(2012) Erfan Younesi et al.   BMC Medical Informatics and Decision Making

Biomedical text mining and its applications in cancer research

(2012) Fei Zhu et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Gut microbiota composition correlates with diet and health in the elderly

(2012) Marcus J. Claesson et al.   NATURE

Reciprocal interactions of the intestinal microbiota and immune system

(2012) Craig L. Maynard et al.   NATURE

Functional interactions between the gut microbiota and host metabolism

(2012) Valentina Tremaroli et al.   NATURE

Diversity, stability and resilience of the human gut microbiota

(2012) Catherine A. Lozupone et al.   NATURE

Metagenomic microbial community profiling using unique clade-specific marker genes

(2012) Nicola Segata et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Human Milk Composition

(2012) Olivia Ballard et al.   PEDIATRIC CLINICS OF NORTH AMERICA

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response

(2012) Scott Schwartz et al.   GENOME BIOLOGY

Influence of Environmental and Genetic Factors Linked to Celiac Disease Risk on Infant Gut Colonization by Bacteroides Species

(2011) Ester Sánchez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacteroides in the Infant Gut Consume Milk Oligosaccharides via Mucus-Utilization Pathways

(2011) Angela Marcobal et al.   Cell Host & Microbe

Cesarean Versus Vaginal Delivery: Long-term Infant Outcomes and the Hygiene Hypothesis

(2011) Josef Neu et al.   CLINICS IN PERINATOLOGY

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Noninvasive stool-based detection of infant gastrointestinal development using gene expression profiles from exfoliated epithelial cells

(2010) Robert S. Chapkin et al.   AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY

Interactions Between Gut Microbiota and Host Metabolism Predisposing to Obesity and Diabetes

(2010) Giovanni Musso et al.   Annual Review of Medicine

Integrating automated literature searches and text mining in biomarker discovery

(2010) Maté Ongenaert et al.   BMC BIOINFORMATICS

Programming infant gut microbiota: influence of dietary and environmental factors

(2010) Tatiana Milena Marques et al.   CURRENT OPINION IN BIOTECHNOLOGY

Comparative Metagenomics and Population Dynamics of the Gut Microbiota in Mother and Infant

(2010) Parag A. Vaishampayan et al.   Genome Biology and Evolution

Gut Microbial Gene Expression in Mother-Fed and Formula-Fed Piglets

(2010) Valeriy Poroyko et al.   PLoS One

Composition, variability, and temporal stability of the intestinal microbiota of the elderly

(2010) M. J. Claesson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Utility of Probiotics in the Treatment of Irritable Bowel Syndrome: A Systematic Review

(2009) Darren M Brenner et al.   AMERICAN JOURNAL OF GASTROENTEROLOGY

Is meconium from healthy newborns actually sterile?

(2008) Esther Jiménez et al.   RESEARCH IN MICROBIOLOGY