Reassessing Domain Architecture Evolution of Metazoan Proteins: Major Impact of Gene Prediction Errors

Domain architecture evolution of pattern-recognition receptors

(2010) Qing Zhang et al.   IMMUNOGENETICS

Quantifying the mechanisms of domain gain in animal proteins

(2010) Marija Buljan et al.   GENOME BIOLOGY

The evolution of protein domain families

(2009) Marija Buljan et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

An Overview of Nested Genes in Eukaryotic Genomes

(2009) Anuj Kumar   EUKARYOTIC CELL

Domain shuffling and the evolution of vertebrates

(2009) T. Kawashima et al.   GENOME RESEARCH

Bioinformatic approaches to identifying orthologs and assessing evolutionary relationships

(2009) Eric J. Vallender   METHODS

Database resources of the National Center for Biotechnology Information

(2009) Eric W. Sayers et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The Universal Protein Resource (UniProt) in 2010

(2009)   NUCLEIC ACIDS RESEARCH

Identifying protein-coding genes in genomic sequences

(2009) Jennifer Harrow et al.   GENOME BIOLOGY

Identification and correction of abnormal, incomplete and mispredicted proteins in public databases

(2008) Alinda Nagy et al.   BMC BIOINFORMATICS

Evolution of protein domain promiscuity in eukaryotes

(2008) M. K. Basu et al.   GENOME RESEARCH

DAhunter: a web-based server that identifies homologous proteins by comparing domain architecture

(2008) B. Lee et al.   NUCLEIC ACIDS RESEARCH

SMART 6: recent updates and new developments

(2008) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

Ensembl 2009

(2008) T. J. P. Hubbard et al.   NUCLEIC ACIDS RESEARCH

CDD: specific functional annotation with the Conserved Domain Database

(2008) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

NCBI Reference Sequences: current status, policy and new initiatives

(2008) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

Arrangements in the modular evolution of proteins

(2008) Andrew D. Moore et al.   TRENDS IN BIOCHEMICAL SCIENCES

Nested genes and increasing organizational complexity of metazoan genomes

(2008) Raquel Assis et al.   TRENDS IN GENETICS

Domain Tree-Based Analysis of Protein Architecture Evolution

(2007) K. Forslund et al.   MOLECULAR BIOLOGY AND EVOLUTION