4.2 Article

A strenuous experimental journey searching for spectroscopic evidence of a bridging nickel-iron-hydride in [NiFe] hydrogenase

Journal

JOURNAL OF SYNCHROTRON RADIATION
Volume 22, Issue -, Pages 1334-1344

Publisher

INT UNION CRYSTALLOGRAPHY
DOI: 10.1107/S1600577515017816

Keywords

nuclear resonance vibrational spectroscopy; NRVS; ultra-weak signal; [NiFe] hydrogenase; Ni-R; Ni-H-Fe wag mode; iron hydride

Funding

  1. NIH [GM-65440]
  2. DOE Office of Biological and Environmental Research
  3. BMBF [03SF0355C]
  4. EU/Energy Network project SOLAR-H2 (FP7) [212508]
  5. DFG - Cluster of Excellence RESOLV [EXC1069]
  6. Max Planck Society
  7. JASRI [2012A0032-2013B0032, 2014B1032]
  8. RIKEN [20120107, 20130022]

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Direct spectroscopic evidence for a hydride bridge in the Ni-R form of [NiFe] hydrogenase has been obtained using iron-specific nuclear resonance vibrational spectroscopy (NRVS). The Ni-H-Fe wag mode at 675 cm(-1) is the first spectroscopic evidence for a bridging hydride in Ni-R as well as the first iron-hydride-related NRVS feature observed for a biological system. Although density function theory (DFT) calculation assisted the determination of the Ni-R structure, it did not predict the Ni-H-Fe wag mode at similar to 675 cm(-1) before NRVS. Instead, the observed Ni-H-Fe mode provided a critical reference for the DFT calculations. While the overall science about Ni-R is presented and discussed elsewhere, this article focuses on the long and strenuous experimental journey to search for and experimentally identify the Ni-H-Fe wag mode in a Ni-R sample. As a methodology, the results presented here will go beyond Ni-R and hydrogenase research and will also be of interest to other scientists who use synchrotron radiation for measuring dilute samples or weak spectroscopic features.

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