SIMA: Python software for analysis of dynamic fluorescence imaging data

Dendritic Inhibition in the Hippocampus Supports Fear Learning

(2014) M. Lovett-Barron et al.   SCIENCE

ACQ4: an open-source software platform for data acquisition and analysis in neurophysiology research

(2014) Luke Campagnola et al.   Frontiers in Neuroinformatics

scikit-image: image processing in Python

(2014) Stéfan van der Walt et al.   PeerJ

Brain-wide 3D imaging of neuronal activity in Caenorhabditis elegans with sculpted light

(2013) Tina Schrödel et al.   NATURE METHODS

Septo-hippocampal GABAergic signaling across multiple modalities in awake mice

(2013) Patrick Kaifosh et al.   NATURE NEUROSCIENCE

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Genetically encoded neural activity indicators

(2011) Loren L Looger et al.   CURRENT OPINION IN NEUROBIOLOGY

Vibrissa-Based Object Localization in Head-Fixed Mice

(2010) D. H. O'Connor et al.   JOURNAL OF NEUROSCIENCE

Learning-related fine-scale specificity imaged in motor cortex circuits of behaving mice

(2010) Takaki Komiyama et al.   NATURE

Automated Analysis of Cellular Signals from Large-Scale Calcium Imaging Data

(2009) Eran A. Mukamel et al.   NEURON

Imaging in vivo: watching the brain in action

(2008) Jason N. D. Kerr et al.   NATURE REVIEWS NEUROSCIENCE