Integrated whole-genome sequencing and temporospatial analysis of a continuing Group A Streptococcus epidemic

Full-Genome Dissection of an Epidemic of Severe Invasive Disease Caused by a Hypervirulent, Recently Emerged Clone of Group A Streptococcus

(2012) Nahuel Fittipaldi et al.   AMERICAN JOURNAL OF PATHOLOGY

Bacterial Genomics in Infectious Disease and the Clinical Pathology Laboratory

(2012) Randall J. Olsen et al.   ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE

High-throughput genome sequencing of two Listeria monocytogenes clinical isolates during a large foodborne outbreak

(2012) Matthew W Gilmour et al.   BMC GENOMICS

Genomics of epidemic pathogens

(2012) K. Georgiades   CLINICAL MICROBIOLOGY AND INFECTION

Evolutionary perspective on the origin of Haitian cholera outbreak strain

(2012) Anirban Dasgupta et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Evolutionary insight from whole-genome sequencing of experimentally evolved microbes

(2012) JEREMY R. DETTMAN et al.   MOLECULAR ECOLOGY

High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity

(2012) Nicholas J. Loman et al.   NATURE REVIEWS MICROBIOLOGY

Rapid Whole-Genome Sequencing for Investigation of a Neonatal MRSA Outbreak

(2012) Claudio U. Köser et al.   NEW ENGLAND JOURNAL OF MEDICINE

Evidence for several waves of global transmission in the seventh cholera pandemic

(2011) Ankur Mutreja et al.   NATURE

Real-time sequencing

(2011) Thomas D. Otto   NATURE REVIEWS MICROBIOLOGY

Origins of theE. coliStrain Causing an Outbreak of Hemolytic–Uremic Syndrome in Germany

(2011) David A. Rasko et al.   NEW ENGLAND JOURNAL OF MEDICINE

Open-Source Genomic Analysis of Shiga-Toxin–ProducingE. coliO104:H4

(2011) Holger Rohde et al.   NEW ENGLAND JOURNAL OF MEDICINE

Whole-Genome Sequencing and Social-Network Analysis of a Tuberculosis Outbreak

(2011) Jennifer L. Gardy et al.   NEW ENGLAND JOURNAL OF MEDICINE

Distinct signatures of diversifying selection revealed by genome analysis of respiratory tract and invasive bacterial populations

(2011) P. R. Shea et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epidemic of Group AStreptococcusM/emm59 Causing Invasive Disease in Canada

(2010) Gregory J. Tyrrell et al.   CLINICAL INFECTIOUS DISEASES

Attack of the clones

(2010) Susannah Baldry   NATURE REVIEWS MICROBIOLOGY

The Origin of the Haitian Cholera Outbreak Strain

(2010) Chen-Shan Chin et al.   NEW ENGLAND JOURNAL OF MEDICINE

Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics

(2010) S. B. Beres et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences

(2010) Jeremy Goecks et al.   GENOME BIOLOGY

TagDust--a program to eliminate artifacts from next generation sequencing data

(2009) T. Lassmann et al.   BIOINFORMATICS

A decade of molecular pathogenomic analysis of group A Streptococcus

(2009) James M. Musser et al.   JOURNAL OF CLINICAL INVESTIGATION

Molecular mechanisms underlying group A streptococcal pathogenesis

(2008) Randall J. Olsen et al.   CELLULAR MICROBIOLOGY

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Role of Mga in group A streptococcal infection at the skin epithelium

(2008) Feng Luo et al.   MICROBIAL PATHOGENESIS

Sensitive, specific polymorphism discovery in bacteria using massively parallel sequencing

(2008) Chad Nusbaum et al.   NATURE METHODS