Retrotransposon Alu is enriched in the epichromatin of HL-60 cells

Genome regulation at the peripheral zone: lamina associated domains in development and disease

(2014) Teresa R Luperchio et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

An in vitro model for Pelger-Huët anomaly

(2014) Ada L. Olins et al.   Nucleus

Nuclear function ofAlus

(2014) Chen Wang et al.   Nucleus

Enclosing Chromatin: Reassembly of the Nucleus after Open Mitosis

(2013) Cornelia Wandke et al.   CELL

Single-Cell Dynamics of Genome-Nuclear Lamina Interactions

(2013) Jop Kind et al.   CELL

Human housekeeping genes, revisited

(2013) Eli Eisenberg et al.   TRENDS IN GENETICS

Evidence for sequence biases associated with patterns of histone methylation

(2012) Zhong Wang et al.   BMC GENOMICS

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

Building a nuclear envelope at the end of mitosis: coordinating membrane reorganization, nuclear pore complex assembly, and chromatin de-condensation

(2012) Allana Schooley et al.   CHROMOSOMA

Chromatin organization — The 30nm fiber

(2012) Sergei A. Grigoryev et al.   EXPERIMENTAL CELL RESEARCH

Constitutive nuclear lamina-genome interactions are highly conserved and associated with A/T-rich sequence

(2012) W. Meuleman et al.   GENOME RESEARCH

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

(2012) S. G. Landt et al.   GENOME RESEARCH

Topological domains in mammalian genomes identified by analysis of chromatin interactions

(2012) Jesse R. Dixon et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

DICER- and AGO3-dependent generation of retinoic acid–induced DR2 Alu RNAs regulates human stem cell proliferation

(2012) QiDong Hu et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The UCSC Genome Browser database: extensions and updates 2013

(2012) Laurence R. Meyer et al.   NUCLEIC ACIDS RESEARCH

MeCP2 Dependent Heterochromatin Reorganization during Neural Differentiation of a Novel Mecp2-Deficient Embryonic Stem Cell Reporter Line

(2012) Bianca Bertulat et al.   PLoS One

Phosphatidylserine colocalizes with epichromatin in interphase nuclei and mitotic chromosomes

(2012) Igor Prudovsky et al.   Nucleus

Human nucleosomes: special role of CG dinucleotides and Alu-nucleosomes

(2011) Thomas Bettecken et al.   BMC GENOMICS

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

(2011) L. Song et al.   GENOME RESEARCH

Alu elements: know the SINEs

(2011) Prescott Deininger   GENOME BIOLOGY

An epichromatin epitope: Persistence in the cell cycle and conservation in evolution

(2011) Ada L. Olins et al.   Nucleus

Effects of Alu elements on global nucleosome positioning in the human genome

(2010) Yoshiaki Tanaka et al.   BMC GENOMICS

Chromosome Territories

(2010) T. Cremer et al.   Cold Spring Harbor Perspectives in Biology

A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

(2009) Chongzhi Zang et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Retinoic acid signaling in myelopoiesis

(2009) Karen Drumea et al.   CURRENT OPINION IN HEMATOLOGY

The impact of retrotransposons on human genome evolution

(2009) Richard Cordaux et al.   NATURE REVIEWS GENETICS

Orchestrating nuclear envelope disassembly and reassembly during mitosis

(2009) Stephan Güttinger et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

High-throughput sequence-based epigenomic analysis of Alu repeats in human cerebellum

(2009) Hehuang Xie et al.   NUCLEIC ACIDS RESEARCH

Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome

(2009) E. Lieberman-Aiden et al.   SCIENCE

The LINC-less granulocyte nucleus

(2008) Ada L. Olins et al.   EUROPEAN JOURNAL OF CELL BIOLOGY

Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions

(2008) Lars Guelen et al.   NATURE

Design and analysis of ChIP-seq experiments for DNA-binding proteins

(2008) Peter V Kharchenko et al.   NATURE BIOTECHNOLOGY