Gene Expression Associated with Early and Late Chronotypes in Drosophila melanogaster

The Impact of Circadian Phenotype and Time since Awakening on Diurnal Performance in Athletes

(2015) Elise Facer-Childs et al.   CURRENT BIOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Time-series RNA-seq analysis package (TRAP) and its application to the analysis of rice, Oryza sativa L. ssp. Japonica, upon drought stress

(2014) Kyuri Jo et al.   METHODS

Molecular Evolution of a Pervasive Natural Amino-Acid Substitution in Drosophila cryptochrome

(2014) Mirko Pegoraro et al.   PLoS One

A model based on oscillatory threshold and build-up of a developmental substance explains gating of adult emergence in Drosophila melanogaster

(2012) N. Mukherjee et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The Drosophila melanogaster Genetic Reference Panel

(2012) Trudy F. C. Mackay et al.   NATURE

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges

(2012) Purvesh Khatri et al.   PLoS Computational Biology

Animal clocks: a multitude of molecular mechanisms for circadian timekeeping

(2011) Mirko Pegoraro et al.   Wiley Interdisciplinary Reviews-RNA

DIURNAL PREFERENCE AND SLEEP QUALITY: SAME GENES? A STUDY OF YOUNG ADULT TWINS

(2010) Nicola L. Barclay et al.   CHRONOBIOLOGY INTERNATIONAL

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

A novel signaling pathway impact analysis

(2008) Adi Laurentiu Tarca et al.   BIOINFORMATICS