LTRsift: a graphical user interface for semi-automatic classification and postprocessing of de novo detected LTR retrotransposons

Mosquitoes LTR Retrotransposons: A Deeper View into the Genomic Sequence of Culex quinquefasciatus

(2012) Renè Massimiliano Marsano et al.   PLoS One

Adaptive seeds tame genomic sequence comparison

(2011) S. M. Kielbasa et al.   GENOME RESEARCH

Ensembl 2012

(2011) P. Flicek et al.   NUCLEIC ACIDS RESEARCH

ModuleOrganizer: detecting modules in families of transposable elements

(2010) Sebastien Tempel et al.   BMC BIOINFORMATICS

LTR retroelements in the genome of Daphnia pulex

(2010) Mina Rho et al.   BMC GENOMICS

TEclass--a tool for automated classification of unknown eukaryotic transposable elements

(2009) G. Abrusan et al.   BIOINFORMATICS

Automatic classification within families of transposable elements: Application to the mariner Family

(2009) Jacques-Deric Rouault et al.   GENE

Simple and fast classification of non-LTR retrotransposons based on phylogeny of their RT domain protein sequences

(2009) Vladimir V. Kapitonov et al.   GENE

Fine-grained annotation and classification of de novo predicted LTR retrotransposons

(2009) Sascha Steinbiss et al.   NUCLEIC ACIDS RESEARCH

AnnotationSketch: a genome annotation drawing library

(2008) Sascha Steinbiss et al.   BIOINFORMATICS

Endogenous retroviruses of the chicken genome

(2008) Ahsan Huda et al.   Biology Direct

VisualRepbase: an interface for the study of occurrences of transposable element families

(2008) Sébastien Tempel et al.   BMC BIOINFORMATICS

LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons

(2008) David Ellinghaus et al.   BMC BIOINFORMATICS

LTR retrotransposon landscape in Medicago truncatula: more rapid removal than in rice

(2008) Hao Wang et al.   BMC GENOMICS

The opossum genome: Insights and opportunities from an alternative mammal

(2008) P. B. Samollow   GENOME RESEARCH