Can meta-omics help to establish causality between contaminant biotransformations and genes or gene products?

A framework for establishing predictive relationships between specific bacterial 16S rRNA sequence abundances and biotransformation rates

(2015) Damian E. Helbling et al.   WATER RESEARCH

Association of Biodiversity with the Rates of Micropollutant Biotransformations among Full-Scale Wastewater Treatment Plant Communities

(2014) David R. Johnson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The functional and taxonomic richness of wastewater treatment plant microbial communities are associated with each other and with ambient nitrogen and carbon availability

(2014) David R. Johnson et al.   ENVIRONMENTAL MICROBIOLOGY

Role of primary substrate composition and concentration on attenuation of trace organic chemicals in managed aquifer recharge systems

(2014) Mazahirali Alidina et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Tuning the performance of a natural treatment process using metagenomics for improved trace organic chemical attenuation

(2014) J. E. Drewes et al.   WATER SCIENCE AND TECHNOLOGY

Emerging chemicals and the evolution of biodegradation capacities and pathways in bacteria

(2013) Boris A Kolvenbach et al.   CURRENT OPINION IN BIOTECHNOLOGY

Anaerobic oxidation of methane coupled to nitrate reduction in a novel archaeal lineage

(2013) Mohamed F. Haroon et al.   NATURE

Evaluating Pesticide Degradation in the Environment: Blind Spots and Emerging Opportunities

(2013) K. Fenner et al.   SCIENCE

Metagenomic analysis reveals potential biodegradation pathways of persistent pesticides in freshwater and marine sediments

(2013) Hua Fang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Metagenomic analysis reveals the prevalence of biodegradation genes for organic pollutants in activated sludge

(2012) Hua Fang et al.   BIORESOURCE TECHNOLOGY

Micropollutant Biotransformation Kinetics Associate with WWTP Process Parameters and Microbial Community Characteristics

(2012) Damian E. Helbling et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and proteomic analyses

(2011) Yujie Men et al.   ISME Journal

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

(2010) Katharina F. Ettwig et al.   NATURE

Gene–environment-wide association studies: emerging approaches

(2010) Duncan Thomas   NATURE REVIEWS GENETICS

E-zyme: predicting potential EC numbers from the chemical transformation pattern of substrate-product pairs

(2009) Y. Yamanishi et al.   BIOINFORMATICS

Advances in molecular and “-omics” technologies to gauge microbial communities and bioremediation at xenobiotic/anthropogen contaminated sites

(2009) Chirayu Desai et al.   BIORESOURCE TECHNOLOGY

Assignment of EC Numbers to Enzymatic Reactions with MOLMAP Reaction Descriptors and Random Forests

(2009) Diogo A. R. S. Latino et al.   Journal of Chemical Information and Modeling

Validating, augmenting and refining genome-wide association signals

(2009) John P. A. Ioannidis et al.   NATURE REVIEWS GENETICS

Systems biology approaches to bioremediation

(2008) Víctor de Lorenzo   CURRENT OPINION IN BIOTECHNOLOGY

Two isozymes of particulate methane monooxygenase with different methane oxidation kinetics are found in Methylocystis sp. strain SC2

(2008) M. Baani et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Outer-membrane transport of aromatic hydrocarbons as a first step in biodegradation

(2008) E. M. Hearn et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Review of Estimation Models for Biodegradation

(2007) Manuela Pavan et al.   Quantitative structure-activity relationships & combinatorial science