Patchwork: allele-specific copy number analysis of whole-genome sequenced tumor tissue
Published 2013 View Full Article
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Title
Patchwork: allele-specific copy number analysis of whole-genome sequenced tumor tissue
Authors
Keywords
Cancer, allele-specific copy number analysis, whole-genome sequencing, aneuploidy, tumor heterogeneity, chromothripsis
Journal
GENOME BIOLOGY
Volume 14, Issue 3, Pages R24
Publisher
Springer Nature
Online
2013-03-26
DOI
10.1186/gb-2013-14-3-r24
References
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- (2008) Peter J Campbell et al. NATURE GENETICS
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