- Home
- Publications
- Publication Search
- Publication Details
Title
CGAL: computing genome assembly likelihoods
Authors
Keywords
Genome assembly, evaluation, likelihood, sequencing.
Journal
GENOME BIOLOGY
Volume 14, Issue 1, Pages R8
Publisher
Springer Nature
Online
2013-01-30
DOI
10.1186/gb-2013-14-1-r8
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Feature-by-Feature – Evaluating De Novo Sequence Assembly
- (2012) Francesco Vezzi et al. PLoS One
- Mauve Assembly Metrics
- (2011) Aaron E. Darling et al. BIOINFORMATICS
- A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies
- (2011) Wenyu Zhang et al. PLoS One
- Comparing De Novo Genome Assembly: The Long and Short of It
- (2011) Giuseppe Narzisi et al. PLoS One
- Improving RNA-Seq expression estimates by correcting for fragment bias
- (2011) Adam Roberts et al. GENOME BIOLOGY
- Limitations of next-generation genome sequence assembly
- (2010) Can Alkan et al. NATURE METHODS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- ABySS: A parallel assembler for short read sequence data
- (2009) J. T. Simpson et al. GENOME RESEARCH
- De novo assembly of human genomes with massively parallel short read sequencing
- (2009) R. Li et al. GENOME RESEARCH
- Parametric Complexity of Sequence Assembly: Theory and Applications to Next Generation Sequencing
- (2009) Niranjan Nagarajan et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Maximum Likelihood Genome Assembly
- (2009) Paul Medvedev et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- De novo genome sequence assembly of a filamentous fungus using Sanger, 454 and Illumina sequence data
- (2009) Scott DiGuistini et al. GENOME BIOLOGY
- ALLPATHS: De novo assembly of whole-genome shotgun microreads
- (2008) J. Butler et al. GENOME RESEARCH
- Mapping short DNA sequencing reads and calling variants using mapping quality scores
- (2008) H. Li et al. GENOME RESEARCH
- De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer
- (2008) D. Hernandez et al. GENOME RESEARCH
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
- (2008) J. C. Dohm et al. NUCLEIC ACIDS RESEARCH
- Single-Molecule DNA Sequencing of a Viral Genome
- (2008) T. D. Harris et al. SCIENCE
- Genome assembly forensics: finding the elusive mis-assembly
- (2008) Adam M Phillippy et al. GENOME BIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More