Substitution rate variation at human CpG sites correlates with non-CpG divergence, methylation level and GC content

Impact of replication timing on non-CpG and CpG substitution rates in mammalian genomes

(2010) C. L. Chen et al.   GENOME RESEARCH

Human mutation rate associated with DNA replication timing

(2009) John A Stamatoyannopoulos et al.   NATURE GENETICS

Effect of the assignment of ancestral CpG state on the estimation of nucleotide substitution rates in mammals

(2008) Daniel J Gaffney et al.   BMC EVOLUTIONARY BIOLOGY

High-Resolution Mapping and Characterization of Open Chromatin across the Genome

(2008) Alan P. Boyle et al.   CELL

Genome-wide, high-resolution DNA methylation profiling using bisulfite-mediated cytosine conversion

(2008) J. Reinders et al.   GENOME RESEARCH

A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis

(2008) Thomas A Down et al.   NATURE BIOTECHNOLOGY

Chromatin-Associated Periodicity in Genetic Variation Downstream of Transcriptional Start Sites

(2008) S. Sasaki et al.   SCIENCE

Mutations of Different Molecular Origins Exhibit Contrasting Patterns of Regional Substitution Rate Variation

(2008) Navin Elango et al.   PLoS Computational Biology

Global Mapping of DNA Methylation in Mouse Promoters Reveals Epigenetic Reprogramming of Pluripotency Genes

(2008) Cassandra R. Farthing et al.   PLoS Genetics

The Impact of Recombination on Nucleotide Substitutions in the Human Genome

(2008) Laurent Duret et al.   PLoS Genetics

Human-macaque comparisons illuminate variation in neutral substitution rates

(2008) Svitlana Tyekucheva et al.   GENOME BIOLOGY