Design and evaluation of genome-wide libraries for RNA interference screens

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Selection of hyperfunctional siRNAs with improved potency and specificity

(2009) Xiaowei Wang et al.   NUCLEIC ACIDS RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

QuantPrime - a flexible tool for reliable high-throughput primer design for quantitative PCR

(2008) Samuel Arvidsson et al.   BMC BIOINFORMATICS

The genome of the model beetle and pest Tribolium castaneum

(2008) Stephen Richards et al.   NATURE

The impact of target site accessibility on the design of effective siRNAs

(2008) Hakim Tafer et al.   NATURE BIOTECHNOLOGY

The art and design of genetic screens: RNA interference

(2008) Michael Boutros et al.   NATURE REVIEWS GENETICS

VectorBase: a data resource for invertebrate vector genomics

(2008) D. Lawson et al.   NUCLEIC ACIDS RESEARCH

Experimental validation of the importance of seed complement frequency to siRNA specificity

(2008) E. M. Anderson et al.   RNA