Plasmids of psychrophilic and psychrotolerant bacteria and their role in adaptation to cold environments

Rhizobial plasmid pLPU83a is able to switch between different transfer machineries depending on its genomic background

(2014) Gonzalo Torres Tejerizo et al.   FEMS MICROBIOLOGY ECOLOGY

Genetic structure and biological properties of the first ancient multiresistance plasmid pKLH80 isolated from a permafrost bacterium

(2014) M. Petrova et al.   MICROBIOLOGY-SGM

Unravelling the structural and mechanistic basis of CRISPR–Cas systems

(2014) John van der Oost et al.   NATURE REVIEWS MICROBIOLOGY

Complete genomes of freshwater sulfur oxidizers Sulfuricella denitrificans skB26 and Sulfuritalea hydrogenivorans sk43H: Genetic insights into the sulfur oxidation pathway of betaproteobacteria

(2014) Tomohiro Watanabe et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Plasmid diversity in arctic strains of Psychrobacter spp.

(2013) Lukasz Dziewit et al.   EXTREMOPHILES

Mercuric reductase genes (merA) and mercury resistance plasmids in High Arctic snow, freshwater and sea-ice brine

(2013) Annette K. Møller et al.   FEMS MICROBIOLOGY ECOLOGY

Structural and functional genomics of plasmid pSinA of Sinorhizobium sp. M14 encoding genes for the arsenite oxidation and arsenic resistance

(2013) Lukasz Drewniak et al.   JOURNAL OF BIOTECHNOLOGY

Bacterial adaptation to cold

(2013) C. Barria et al.   MICROBIOLOGY-SGM

Structure, function and biosynthesis of O2-tolerant hydrogenases

(2013) Johannes Fritsch et al.   NATURE REVIEWS MICROBIOLOGY

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

(2013) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Sequence determination and analysis of three plasmids of Pseudomonas sp. GLE121, a psychrophile isolated from surface ice of Ecology Glacier (Antarctica)

(2013) Lukasz Dziewit et al.   PLASMID

Poles Apart: Arctic and Antarctic Octadecabacter strains Share High Genome Plasticity and a New Type of Xanthorhodopsin

(2013) John Vollmers et al.   PLoS One

pGIAK1, a Heavy Metal Resistant Plasmid from an Obligate Alkaliphilic and Halotolerant Bacterium Isolated from the Antarctic Concordia Station Confined Environment

(2013) Suxia Guo et al.   PLoS One

A brief multi-disciplinary review on antimicrobial resistance in medicine and its linkage to the global environmental microbiota

(2013) L. Cantas et al.   Frontiers in Microbiology

Plasmid pP62BP1 isolated from an Arctic Psychrobacter sp. strain carries two highly homologous type II restriction-modification systems and a putative organic sulfate metabolism operon

(2012) Robert Lasek et al.   EXTREMOPHILES

Antarctic DNA moving forward: genomic plasticity and biotechnological potential

(2012) Cecilia Martínez-Rosales et al.   FEMS MICROBIOLOGY LETTERS

Flagella and bacterial pathogenicity

(2012) Qiangde Duan et al.   JOURNAL OF BASIC MICROBIOLOGY

Contribution of reactive oxygen species to UV-B-induced damage in bacteria

(2012) Ana L. Santos et al.   JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY B-BIOLOGY

Characterisation of a cryptic plasmid from an Antarctic bacterium Pedobacter cryoconitis strain BG5

(2012) Clemente Michael Vui Ling Wong et al.   PLASMID

Evidence for hydrogen oxidation and metabolic plasticity in widespread deep-sea sulfur-oxidizing bacteria

(2012) K. Anantharaman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plasmid-mediated horizontal gene transfer is a coevolutionary process

(2012) Ellie Harrison et al.   TRENDS IN MICROBIOLOGY

Complete genome sequence of the aquatic bacterium Runella slithyformis type strain (LSU 4T)

(2012) Alex Copeland et al.   Standards in Genomic Sciences

Functional characterization of the type II PamI restriction-modification system derived from plasmid pAMI7 of Paracoccus aminophilusJCM 7686

(2011) Lukasz Dziewit et al.   FEMS MICROBIOLOGY LETTERS

Complete Genome Sequence of the Marine Cellulose- and Xylan-Degrading Bacterium Glaciecolasp. Strain 4H-3-7+YE-5

(2011) B. Klippel et al.   JOURNAL OF BACTERIOLOGY

Characterization of a cryptic plasmid pSM429 and its application for heterologous expression in psychrophilic Pseudoalteromonas

(2011) Dian-Li Zhao et al.   Microbial Cell Factories

Large-Scale Analysis of Plasmid Relationships through Gene-Sharing Networks

(2011) M. Tamminen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Evolution and classification of the CRISPR–Cas systems

(2011) Kira S. Makarova et al.   NATURE REVIEWS MICROBIOLOGY

Comparative Study of the Roles of AhpC and KatE as Respiratory Antioxidants in Brucella abortus 2308

(2010) K. H. Steele et al.   JOURNAL OF BACTERIOLOGY

Mobility of Plasmids

(2010) C. Smillie et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Metabolomic and transcriptomic stress response of Escherichia coli

(2010) Szymon Jozefczuk et al.   Molecular Systems Biology

Integrative and conjugative elements: mosaic mobile genetic elements enabling dynamic lateral gene flow

(2010) Rachel A. F. Wozniak et al.   NATURE REVIEWS MICROBIOLOGY

CDD: a Conserved Domain Database for the functional annotation of proteins

(2010) A. Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Diversity and ecology of psychrophilic microorganisms

(2010) Rosa Margesin et al.   RESEARCH IN MICROBIOLOGY

Molecular adaptations to psychrophily: the impact of ‘omic’ technologies

(2010) Ana Casanueva et al.   TRENDS IN MICROBIOLOGY

The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay

(2009) Erik Hjerde et al.   BMC GENOMICS

Molecular structure and translocation of a multiple antibiotic resistance region of aPsychrobacter psychrophiluspermafrost strain

(2009) Mayya Petrova et al.   FEMS MICROBIOLOGY LETTERS

REBASE—a database for DNA restriction and modification: enzymes, genes and genomes

(2009) Richard J. Roberts et al.   NUCLEIC ACIDS RESEARCH

ACLAME: A CLAssification of Mobile genetic Elements, update 2010

(2009) Raphaël Leplae et al.   NUCLEIC ACIDS RESEARCH

Characterization of a cryptic plasmid pSFKW33 from Shewanella sp. 33B

(2009) Katarzyna Werbowy et al.   PLASMID

The genomic basis of trophic strategy in marine bacteria

(2009) F. M. Lauro et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database

(2008) Tim Carver et al.   BIOINFORMATICS

Molecular characterization of a cryptic plasmid from the psychrotrophic antarctic bacterium Pseudoalteromonas sp. 643A

(2008) Hubert Cieśliński et al.   PLASMID