Viruses and microRNAs: a toolbox for systematic analysis

The Fascinating World of RNA Interference

(2012) Afsar Raza Naqvi et al.   International Journal of Biological Sciences

3′ uridylation and the regulation of RNA function in the cytoplasm

(2010) Chris J. Norbury   BIOCHEMICAL SOCIETY TRANSACTIONS

Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP

(2010) Markus Hafner et al.   CELL

Systematic Analysis of Viral and Cellular MicroRNA Targets in Cells Latently Infected with Human γ-Herpesviruses by RISC Immunoprecipitation Assay

(2010) Lars Dölken et al.   Cell Host & Microbe

KSHV-encoded miRNAs target MAF to induce endothelial cell reprogramming

(2010) A. Hansen et al.   GENES & DEVELOPMENT

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness

(2010) A. M. Burroughs et al.   GENOME RESEARCH

Numerous Conserved and Divergent MicroRNAs Expressed by Herpes Simplex Viruses 1 and 2

(2010) I. Jurak et al.   JOURNAL OF VIROLOGY

Virally Induced Cellular MicroRNA miR-155 Plays a Key Role in B-Cell Immortalization by Epstein-Barr Virus

(2010) S. D. Linnstaedt et al.   JOURNAL OF VIROLOGY

MicroRNA Expression and Virulence in Pandemic Influenza Virus-Infected Mice

(2010) Y. Li et al.   JOURNAL OF VIROLOGY

Epigenetic Regulation of Kaposi's Sarcoma-Associated Herpesvirus Latency by Virus-Encoded MicroRNAs That Target Rta and the Cellular Rbl2-DNMT Pathway

(2010) F. Lu et al.   JOURNAL OF VIROLOGY

Regulation of Tumor Necrosis Factor-Like Weak Inducer of Apoptosis Receptor Protein (TWEAKR) Expression by Kaposi's Sarcoma-Associated Herpesvirus MicroRNA Prevents TWEAK-Induced Apoptosis and Inflammatory Cytokine Expression

(2010) J. R. Abend et al.   JOURNAL OF VIROLOGY

Identifying targets of miR-143 using a SILAC-based proteomic approach

(2010) Yi Yang et al.   Molecular BioSystems

Mammalian microRNAs predominantly act to decrease target mRNA levels

(2010) Huili Guo et al.   NATURE

Genome-wide RNAi screen identifies human host factors crucial for influenza virus replication

(2010) Alexander Karlas et al.   NATURE

Regulation of NF-κB inhibitor IκBα and viral replication by a KSHV microRNA

(2010) Xiufen Lei et al.   NATURE CELL BIOLOGY

miR-132 regulates antiviral innate immunity through suppression of the p300 transcriptional co-activator

(2010) Dimitrios Lagos et al.   NATURE CELL BIOLOGY

The human cytomegalovirus microRNA miR-UL112 acts synergistically with a cellular microRNA to escape immune elimination

(2010) Daphna Nachmani et al.   NATURE IMMUNOLOGY

microRNA profiling in Epstein–Barr virus-associated B-cell lymphoma

(2010) Jochen Imig et al.   NUCLEIC ACIDS RESEARCH

miRBase: integrating microRNA annotation and deep-sequencing data

(2010) A. Kozomara et al.   NUCLEIC ACIDS RESEARCH

Novel HIV-1 Knockdown Targets Identified by an Enriched Kinases/Phosphatases shRNA Library Using a Long-Term Iterative Screen in Jurkat T-Cells

(2010) Sylvie Rato et al.   PLoS One

Characterization of Epstein-Barr Virus miRNAome in Nasopharyngeal Carcinoma by Deep Sequencing

(2010) Shu-Jen Chen et al.   PLoS One

Combined agonist-antagonist genome-wide functional screening identifies broadly active antiviral microRNAs

(2010) D. Santhakumar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Systematic comparison of microarray profiling, real-time PCR, and next-generation sequencing technologies for measuring differential microRNA expression

(2010) A. Git et al.   RNA

A Kinome RNAi Screen Identified AMPK as Promoting Poxvirus Entry through the Control of Actin Dynamics

(2010) Theresa S. Moser et al.   PLoS Pathogens

Cytomegalovirus microRNAs Facilitate Persistent Virus Infection in Salivary Glands

(2010) Lars Dölken et al.   PLoS Pathogens

Six RNA Viruses and Forty-One Hosts: Viral Small RNAs and Modulation of Small RNA Repertoires in Vertebrate and Invertebrate Systems

(2010) Poornima Parameswaran et al.   PLoS Pathogens

Expression profiling of microRNAs by deep sequencing

(2009) C. J. Creighton et al.   BRIEFINGS IN BIOINFORMATICS

MicroRNAs: Target Recognition and Regulatory Functions

(2009) David P. Bartel   CELL

Origins and Mechanisms of miRNAs and siRNAs

(2009) Richard W. Carthew et al.   CELL

Diverse Herpesvirus MicroRNAs Target the Stress-Induced Immune Ligand MICB to Escape Recognition by Natural Killer Cells

(2009) Daphna Nachmani et al.   Cell Host & Microbe

Common themes in siRNA-mediated epigenetic silencing pathways

(2009) Andre Verdel et al.   INTERNATIONAL JOURNAL OF DEVELOPMENTAL BIOLOGY

Identification of Novel Epstein-Barr Virus MicroRNA Genes from Nasopharyngeal Carcinomas

(2009) J. Y. Zhu et al.   JOURNAL OF VIROLOGY

Analysis of Human Alphaherpesvirus MicroRNA Expression in Latently Infected Human Trigeminal Ganglia

(2009) J. L. Umbach et al.   JOURNAL OF VIROLOGY

Quantitative Proteomics by Metabolic Labeling of Model Organisms

(2009) Joost W. Gouw et al.   MOLECULAR & CELLULAR PROTEOMICS

Discovery of insect and human dengue virus host factors

(2009) October M. Sessions et al.   NATURE

Human host factors required for influenza virus replication

(2009) Renate König et al.   NATURE

Argonaute HITS-CLIP decodes microRNA–mRNA interaction maps

(2009) Sung Wook Chi et al.   NATURE

Limitations and possibilities of small RNA digital gene expression profiling

(2009) Sam E V Linsen et al.   NATURE METHODS

A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics

(2009) Jürgen Cox et al.   Nature Protocols

Sequencing technologies — the next generation

(2009) Michael L. Metzker   NATURE REVIEWS GENETICS

A genome-wide genetic screen for host factors required for hepatitis C virus propagation

(2009) Q. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dengue Virus Type 2 Infections of Aedes aegypti Are Modulated by the Mosquito's RNA Interference Pathway

(2009) Irma Sánchez-Vargas et al.   PLoS Pathogens

Global Analysis of Host-Pathogen Interactions that Regulate Early-Stage HIV-1 Replication

(2008) Renate König et al.   CELL

Genome-Scale RNAi Screen for Host Factors Required for HIV Replication

(2008) Honglin Zhou et al.   Cell Host & Microbe

Viral and Cellular MicroRNAs as Determinants of Viral Pathogenesis and Immunity

(2008) Eva Gottwein et al.   Cell Host & Microbe

MicroRNAs in the immune response

(2008) Irene Pedersen et al.   CYTOKINE

Comprehensive Profiling of Epstein-Barr Virus MicroRNAs in Nasopharyngeal Carcinoma

(2008) K. Cosmopoulos et al.   JOURNAL OF VIROLOGY

Evolutionarily Conserved Function of a Viral MicroRNA

(2008) G. J. Seo et al.   JOURNAL OF VIROLOGY

Novel Less-Abundant Viral MicroRNAs Encoded by Herpes Simplex Virus 2 Latency-Associated Transcript and Their Roles in Regulating ICP34.5 and ICP0 mRNAs

(2008) S. Tang et al.   JOURNAL OF VIROLOGY

Human Cytomegalovirus Infection Alters the Expression of Cellular MicroRNA Species That Affect Its Replication

(2008) F.-Z. Wang et al.   JOURNAL OF VIROLOGY

Drosophila RNAi screen identifies host genes important for influenza virus replication

(2008) Linhui Hao et al.   NATURE

RNA interference screen for human genes associated with West Nile virus infection

(2008) Manoj N. Krishnan et al.   NATURE

Tandem array–based expression screens identify host mRNA targets of virus-encoded microRNAs

(2008) Joseph M Ziegelbauer et al.   NATURE GENETICS

Human microRNAs regulate stress-induced immune responses mediated by the receptor NKG2D

(2008) Noam Stern-Ginossar et al.   NATURE IMMUNOLOGY

Identification of functional microRNAs released through asymmetrical processing of HIV-1 TAR element

(2008) D. L. Ouellet et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for high-throughput functional genomic data

(2008) T. Barrett et al.   NUCLEIC ACIDS RESEARCH

miRecords: an integrated resource for microRNA-target interactions

(2008) F. Xiao et al.   NUCLEIC ACIDS RESEARCH

An acutely and latently expressed herpes simplex virus 2 viral microRNA inhibits expression of ICP34.5, a viral neurovirulence factor

(2008) S. Tang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification of Host Proteins Required for HIV Infection Through a Functional Genomic Screen

(2008) Abraham L. Brass et al.   SCIENCE

Epstein–Barr virus growth/latency III program alters cellular microRNA expression

(2008) Jennifer E. Cameron et al.   VIROLOGY

Merkel cell polyomavirus encodes a microRNA with the ability to autoregulate viral gene expression

(2008) Gil Ju Seo et al.   VIROLOGY

Inhibition of microRNA with antisense oligonucleotides

(2007) Christine C. Esau   METHODS