Proteome-wide prediction of protein-protein interactions from high-throughput data

Inferring high-confidence human protein-protein interactions

(2012) Xueping Yu et al.   BMC BIOINFORMATICS

Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs

(2012) Zhi-Ping Liu et al.   BMC BIOINFORMATICS

Network-based analysis of complex diseases

(2012) Z.-P. Liu et al.   IET Systems Biology

Prediction of hot spots in protein interfaces using a random forest model with hybrid features

(2012) L. Wang et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Coexpression network analysis in chronic hepatitis B and C hepatic lesions reveals distinct patterns of disease progression to hepatocellular carcinoma

(2012) Danning He et al.   Journal of Molecular Cell Biology

Identification of dysfunctional modules and disease genes in congenital heart disease by a network-based approach

(2011) Danning He et al.   BMC GENOMICS

Identifying disease genes and module biomarkers by differential interactions

(2011) Xiaoping Liu et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

Detecting and analyzing differentially activated pathways in brain regions of Alzheimer's disease patients

(2011) Zhi-Ping Liu et al.   Molecular BioSystems

DIPOS: database of interacting proteins in Oryza sativa

(2011) Achyut Sapkota et al.   Molecular BioSystems

Toward an understanding of the protein interaction network of the human liver

(2011) J. Wang et al.   Molecular Systems Biology

Prediction of protein–RNA binding sites by a random forest method with combined features

(2010) Zhi-Ping Liu et al.   BIOINFORMATICS

Dissecting spatio-temporal protein networks driving human heart development and related disorders

(2010) Kasper Lage et al.   Molecular Systems Biology

Network organization of the human autophagy system

(2010) Christian Behrends et al.   NATURE

Modularity optimization in community detection of complex networks

(2009) X. S. Zhang et al.   EPL

FPPI:Fusarium graminearumProtein−Protein Interaction Database

(2009) Xing-Ming Zhao et al.   JOURNAL OF PROTEOME RESEARCH

Tissue specificity and the human protein interaction network

(2009) Alice Bossi et al.   Molecular Systems Biology

The Negatome database: a reference set of non-interacting protein pairs

(2009) Pawel Smialowski et al.   NUCLEIC ACIDS RESEARCH

The IntAct molecular interaction database in 2010

(2009) B. Aranda et al.   NUCLEIC ACIDS RESEARCH

A discriminative approach for identifying domain-domain interactions from protein-protein interactions

(2009) Xing-Ming Zhao et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Protein networks in disease

(2008) T. Ideker et al.   GENOME RESEARCH

Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species

(2008) KiYoung Lee et al.   NUCLEIC ACIDS RESEARCH

Using support vector machine combined with auto covariance to predict protein–protein interactions from protein sequences

(2008) Yanzhi Guo et al.   NUCLEIC ACIDS RESEARCH

EcID. A database for the inference of functional interactions in E. coli

(2008) E. Andres Leon et al.   NUCLEIC ACIDS RESEARCH

Human Protein Reference Database--2009 update

(2008) T. S. Keshava Prasad et al.   NUCLEIC ACIDS RESEARCH