Pyrosequencing revealed shifts of prokaryotic communities between healthy and disease-like tissues of the Red Sea spongeCrella cyathophora

Pyrosequencing Reveals the Microbial Communities in the Red Sea Sponge Carteriospongia foliascens and Their Impressive Shifts in Abnormal Tissues

(2014) Zhao-Ming Gao et al.   MICROBIAL ECOLOGY

Specificity and transcriptional activity of microbiota associated with low and high microbial abundance sponges from the Red Sea

(2013) Lucas Moitinho-Silva et al.   MOLECULAR ECOLOGY

Same, same but different: symbiotic bacterial associations in GBR sponges

(2013) N. S. Webster et al.   Frontiers in Microbiology

Sponge white patch disease affecting the Caribbean sponge Amphimedon compressa

(2012) H Angermeier et al.   DISEASES OF AQUATIC ORGANISMS

Thermal stress responses in the bacterial biosphere of the Great Barrier Reef sponge,Rhopaloeides odorabile

(2012) Rachel Simister et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial community profiles in low microbial abundance sponges

(2012) Emily C. Giles et al.   FEMS MICROBIOLOGY ECOLOGY

Marine sponges and their microbial symbionts: love and other relationships

(2011) Nicole S. Webster et al.   ENVIRONMENTAL MICROBIOLOGY

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Assessing the complex sponge microbiota: core, variable and species-specific bacterial communities in marine sponges

(2011) Susanne Schmitt et al.   ISME Journal

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

The pathology of sponge orange band disease affecting the Caribbean barrel sponge Xestospongia muta

(2010) Hilde Angermeier et al.   FEMS MICROBIOLOGY ECOLOGY

Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea

(2010) On On Lee et al.   ISME Journal

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

(2010) Jens Reeder et al.   NATURE METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies

(2009) Yong Wang et al.   PLoS One

Shifts in microbial and chemical patterns within the marine spongeAplysina aerophobaduring a disease outbreak

(2008) Nicole S. Webster et al.   ENVIRONMENTAL MICROBIOLOGY

The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains

(2008) Pablo Yarza et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY