Identifying communities from multiplex biological networks

The BioPlex Network: A Systematic Exploration of the Human Interactome

(2015) Edward L. Huttlin et al.   CELL

Systematic Identification of Molecular Links between Core and Candidate Genes in Breast Cancer

(2015) Rodrigo Arroyo et al.   JOURNAL OF MOLECULAR BIOLOGY

Panorama of ancient metazoan macromolecular complexes

(2015) Cuihong Wan et al.   NATURE

Uncovering disease-disease relationships through the incomplete interactome

(2015) J. Menche et al.   SCIENCE

Extreme multifunctional proteins identified from a human protein interaction network

(2015) Charles E. Chapple et al.   Nature Communications

Detection of Composite Communities in Multiplex Biological Networks

(2015) Laura Bennett et al.   Scientific Reports

Clinical features, diagnostic criteria, and management of Coffin-Siris syndrome

(2014) Samantha S. Vergano et al.   AMERICAN JOURNAL OF MEDICAL GENETICS PART C-SEMINARS IN MEDICAL GENETICS

Genotype-phenotype correlation of Coffin-Siris syndrome caused by mutations inSMARCB1,SMARCA4,SMARCE1, andARID1A

(2014) Tomoki Kosho et al.   AMERICAN JOURNAL OF MEDICAL GENETICS PART C-SEMINARS IN MEDICAL GENETICS

Algorithms and tools for protein–protein interaction networks clustering, with a special focus on population-based stochastic methods

(2014) Clara Pizzuti et al.   BIOINFORMATICS

A Proteome-Scale Map of the Human Interactome Network

(2014) Thomas Rolland et al.   CELL

Emerging roles of MCPH1: Expedition from primary microcephaly to cancer

(2014) Thejaswini Venkatesh et al.   EUROPEAN JOURNAL OF CELL BIOLOGY

The Functional Landscape of Hsp27 Reveals New Cellular Processes such as DNA Repair and Alternative Splicing and Proposes Novel Anticancer Targets

(2014) Maria Katsogiannou et al.   MOLECULAR & CELLULAR PROTEOMICS

Structural measures for multiplex networks

(2014) Federico Battiston et al.   PHYSICAL REVIEW E

Critical limitations of consensus clustering in class discovery

(2014) Yasin Șenbabaoğlu et al.   Scientific Reports

A Chaperome Subnetwork Safeguards Proteostasis in Aging and Neurodegenerative Disease

(2014) Marc Brehme et al.   Cell Reports

Smaller and larger deletions of the Williams Beuren syndrome region implicate genes involved in mild facial phenotype, epilepsy and autistic traits

(2013) Carmela Fusco et al.   EUROPEAN JOURNAL OF HUMAN GENETICS

A new reference implementation of the PSICQUIC web service

(2013) Noemi del-Toro et al.   NUCLEIC ACIDS RESEARCH

The Reactome pathway knowledgebase

(2013) David Croft et al.   NUCLEIC ACIDS RESEARCH

De novo mutations in the actin genes ACTB and ACTG1 cause Baraitser-Winter syndrome

(2012) Jean-Baptiste Rivière et al.   NATURE GENETICS

Mutations affecting components of the SWI/SNF complex cause Coffin-Siris syndrome

(2012) Yoshinori Tsurusaki et al.   NATURE GENETICS

A travel guide to Cytoscape plugins

(2012) Rintaro Saito et al.   NATURE METHODS

Consensus clustering in complex networks

(2012) Andrea Lancichinetti et al.   Scientific Reports

A Variational Bayesian Framework for Clustering with Multiple Graphs

(2011) Motoki Shiga et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

Recent advances in clustering methods for protein interaction networks

(2010) Jianxin Wang et al.   BMC GENOMICS

Link communities reveal multiscale complexity in networks

(2010) Yong-Yeol Ahn et al.   NATURE

SPIKE: a database of highly curated human signaling pathways

(2010) Arnon Paz et al.   NUCLEIC ACIDS RESEARCH

Community Structure in Time-Dependent, Multiscale, and Multiplex Networks

(2010) P. J. Mucha et al.   SCIENCE

CORUM: the comprehensive resource of mammalian protein complexes—2009

(2009) Andreas Ruepp et al.   NUCLEIC ACIDS RESEARCH

On Modularity Clustering

(2008) U. Brandes et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

Fast unfolding of communities in large networks

(2008) Vincent D Blondel et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

WSTF regulates the H2A.X DNA damage response via a novel tyrosine kinase activity

(2008) Andrew Xiao et al.   NATURE

An empirical framework for binary interactome mapping

(2008) Kavitha Venkatesan et al.   NATURE METHODS

An experimentally derived confidence score for binary protein-protein interactions

(2008) Pascal Braun et al.   NATURE METHODS

PID: the Pathway Interaction Database

(2008) Carl F. Schaefer et al.   NUCLEIC ACIDS RESEARCH