Antigenic evolution of viruses in host populations

Prediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses

(2016) Richard A. Neher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global circulation patterns of seasonal influenza viruses vary with antigenic drift

(2015) Trevor Bedford et al.   NATURE

Estimates of the reproduction number for seasonal, pandemic, and zoonotic influenza: a systematic review of the literature

(2014) Matthew Biggerstaff et al.   BMC INFECTIOUS DISEASES

A predictive fitness model for influenza

(2014) Marta Łuksza et al.   NATURE

Antibody landscapes after influenza virus infection or vaccination

(2014) J. M. Fonville et al.   SCIENCE

The Route of HIV Escape from Immune Response Targeting Multiple Sites Is Determined by the Cost-Benefit Tradeoff of Escape Mutations

(2014) Rebecca Batorsky et al.   PLoS Computational Biology

Integrating influenza antigenic dynamics with molecular evolution

(2014) Trevor Bedford et al.   eLife

Reply to "Coadaptive Stability of Interfering Particles with HIV-1 When There Is an Evolutionary Conflict"

(2013) I. M. Rouzine et al.   JOURNAL OF VIROLOGY

Mutational and fitness landscapes of an RNA virus revealed through population sequencing

(2013) Ashley Acevedo et al.   NATURE

Substitutions Near the Receptor Binding Site Determine Major Antigenic Change During Influenza Virus Evolution

(2013) B. F. Koel et al.   SCIENCE

Canalization of the evolutionary trajectory of the human influenza virus

(2012) Trevor Bedford et al.   BMC BIOLOGY

Clonal Interference in the Evolution of Influenza

(2012) N. Strelkowa et al.   GENETICS

Genetic Diversity and the Structure of Genealogies in Rapidly Adapting Populations

(2012) M. M. Desai et al.   GENETICS

Design Requirements for Interfering Particles To Maintain Coadaptive Stability with HIV-1

(2012) I. M. Rouzine et al.   JOURNAL OF VIROLOGY

Genealogies of rapidly adapting populations

(2012) R. A. Neher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distribution of fixed beneficial mutations and the rate of adaptation in asexual populations

(2012) B. H. Good et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Emergent Neutrality in Adaptive Asexual Evolution

(2011) Stephan Schiffels et al.   GENETICS

Autonomous Targeting of Infectious Superspreaders Using Engineered Transmissible Therapies

(2011) Vincent T. Metzger et al.   PLoS Computational Biology

The noisy edge of traveling waves

(2010) Oskar Hallatschek   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantifying the Impact of Immune Escape on Transmission Dynamics of Influenza

(2009) A. W. Park et al.   SCIENCE

Time Lines of Infection and Disease in Human Influenza: A Review of Volunteer Challenge Studies

(2008) Fabrice Carrat et al.   AMERICAN JOURNAL OF EPIDEMIOLOGY

The Stochastic Edge in Adaptive Evolution

(2008) E. Brunet et al.   GENETICS

The genomic and epidemiological dynamics of human influenza A virus

(2008) Andrew Rambaut et al.   NATURE

Influenza vaccine strain selection and recent studies on the global migration of seasonal influenza viruses

(2008) Colin A. Russell et al.   VACCINE

The traveling-wave approach to asexual evolution: Muller's ratchet and speed of adaptation

(2007) Igor M. Rouzine et al.   THEORETICAL POPULATION BIOLOGY